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. 2016 Feb 5;82(4):1215–1226. doi: 10.1128/AEM.02852-15

TABLE 1.

General characteristics of isolates from the marine OM43 and related freshwater “Ca. Methylopumilus” strains

Parameter Result for strain:
HTCC2181a KB13a MBRS-H7 MMS-2-53b MMS-10A-171b
No. of contigs 3 1 1 1 1
Genome size (bp) 1,304,428 1,334,326 1,352,785 1,356,428 1,754,988
GC (%) 37.9 35.4 35.5 36.97 44.52
ORF 1,320 1,382 1,377 1,389 1,757
tRNAs 36 36 36 36 39
Isolation point Oregon Hawaii Red Sea Zurich Zurich
Isolation source Seawater Seawater Seawater Lake Lake
ANIc (%)
    With respect to HTCC2181 100 66.34 65.95 65.98 65.48
    With respect to KB13 66.26 100 94.19 65.83 66.14
Growth rate (generations per day)d 1.5 NDe 1.5 0.37 ND
a

Genomes were reannotated in the INDIGO pipeline. Open reading frame (ORF) and RNA predictions may vary from those in the original data.

b

MMS-2-53, “Ca. Methylopumilus planktonicus”; MMS-10A-171, “Ca. Methylopumilus turicensis” (7).

c

ANI, average nucleotide identity.

d

In medium amended with methanol (100 μM) for HTCC2181 (12) and MMS-2-53 (7).

e

ND, not determined.