Table 3. Leave-one-out cross validation where one of the total samples was removed, a prediction model was developed using the remaining samples, and the left-out sample was then predicted for sphere or adherent cells in each platform.
An output of 1 indicates that a left-out sample from adherent or sphere cells was predicted to be an adherent or sphere cell, respectively. An output of 0 indicates that a left-out sample from adherent or sphere cells was predicted as a sphere or adherent cell, respectively.
| Gene Sets | Samples of Affymetrix | Samples of Illumina | |||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Adherent cells | Sphere cells | Adherent cells | Sphere cells | ||||||||||||||||
| 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 1 | 2 | 3 | 4 | |
| Cytokine-cytokine receptor interaction | 1 | 1 | 1 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 1 | 1 | 1 | 1 |
| Valine, leucine and isoleucine degradation | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 0 | 1 | 0 | 1 | 1 | 1 | 1 | 0 | 1 | 1 | 1 | 1 |
| Systemic lupus erythematosus | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 1 | 1 | 1 | 1 |
| DNA replication | 1 | 1 | 1 | 0 | 1 | 1 | 1 | 1 | 1 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |