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. 2016 Feb 13;17:110. doi: 10.1186/s12864-016-2431-x

Table 1.

Total SNPs and InDels for each Brazilian soybean cultivar

Type SNPs InDels
Non-coding region Coding region None Total Non-coding region Coding region None Total
Anta 82 848,752 5,231 99,327 953,310 203,207 25,458 1,390 230,055
BR 16 1,267,827 8,302 158,063 1,434,192 300,160 38,513 2,088 340,761
BRS 232 1,166,390 7,772 148,274 1,322,436 275,225 35,666 1,779 312,670
BRS 284 778,152 6,204 100,434 884,790 196,677 25,615 1,584 223,876
BRS 360 RR 1,078,635 7,169 128,689 1,214,493 252,198 32,059 1,731 285,988
BRS 361 1,017,791 5,595 115,310 1,138,696 222,364 27,243 1,354 250,961
BRS Sambaiba 1,318,067 8,113 162,389 1,488,569 311,172 39,236 1,909 352,317
BRS Valiosa RR 1,321,233 7,824 158,653 1,487,710 296,309 38,087 1,812 336,208
BRS/GO 8360 839,016 5,276 102,261 946,553 202,591 26,176 1,377 230,144
BRS/GO 8660 1,373,660 8,511 159,418 1,541,589 299,360 37,447 1,905 338,712
BRS/GO Chapadões 1,296,919 7,775 152,967 1,457,661 304,194 38,021 1,898 344,113
BRSMG 850G RR 1,273,571 7,868 157,019 1,438,458 301,255 38,665 1,891 341,811
BRSMT Pintado 1,326,229 8,574 151,052 1,485,855 299,477 36,717 2,006 338,200
BRSMT Uirapuru 1,376,297 8,346 162,189 1,546,832 314,856 39,732 1,909 356,497
CD 201 1,305,772 8,447 150,706 1,464,925 298,825 37,151 2,023 337,999
Conquista 1,338,601 7,955 159,887 1,506,443 317,096 39,952 1,952 359,000
Doko 1,414,796 9,372 165,725 1,589,893 327,783 40,606 2,221 370,610
Embrapa 48 1,091,441 7,882 136,232 1,235,555 264,083 33,767 1,807 299,657
Emgopa 301 1,208,853 7,825 144,216 1,360,894 281,240 35,661 1,758 318,659
FT Abyara 1,241,667 8,250 153,768 1,403,685 291,494 37,394 1,761 330,649
FT Cristalina 1,341,883 8,165 160,115 1,510,163 312,875 39,400 1,922 354,197
IAC 8 1,279,510 7,546 150,883 1,437,939 295,688 37,126 1,791 334,605
IAS 5 1,162,970 8,576 141,328 1,312,874 275,267 34,213 1,974 311,454
NA 5909 RG 949,130 6,184 108,680 1,063,994 222,730 27,813 1,398 251,941
P98Y11 1,341,733 8,376 156,262 1,506,371 301,238 37,248 1,942 340,428
Paraná 1,168,303 8,209 139,875 1,316,387 283,149 35,058 1,873 320,080
Santa Rosa 1,485,334 9,409 178,350 1,673,093 340,609 42,878 2,177 385,664
VMAX RR 1,008,968 6,154 107,398 1,122,520 231,321 27,871 1,396 260,588

Non-coding regions: corresponding to allelic variations up to 5 kb upstream or downstream of genes and intergenic regions modifications; Coding region: corresponding to UTR regions, exons, introns, and splice site modifications; None: no description available for the region