Table 5.
Nucleotide content and gene count levels of genome
| Attribute | Genome (total) |
|
|---|---|---|
| Value | % of totala | |
| Size (bp) | 3 197 911 | 100 |
| G+C content (bp) | 949 779 | 29.70 |
| Coding region (bp) | 2 785 986 | 87.12 |
| Total genes | 3333 | 100 |
| RNA genes | 62 | 1.86 |
| Pseudo genes | 53 | 1.59 |
| Protein-coding genes | 3271 | 98.13 |
| Genes with function prediction | 2376 | 71.28 |
| Genes assigned to COGs | 2102 | 63.06 |
| Genes with Pfam domains | 1660 | 49.80 |
| Genes with peptide signals | 68 | 2.04 |
| Genes with transmembrane helices | 824 | 24.72 |
COGs, Clusters of Orthologous Groups database.
a
Total is based on either size of genome in base pairs or total number of protein-coding genes in annotated genome.