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(Workflow of VDAP-GUI) the left section shows the user input to the software. The middle section indicates the processes and softwares used. In the variant calling process four options are possible S SAMtools, V VarScan, F FreeBayes and M Multicom. The right section shows the outputs given at each step by VDAP-GUI. The arrows indicate dependency between each step. The upper panel shows the analysis pipeline and the lower panel shows the variant annotation module
