Table 2.
GO enrichment analysis of genes more expressed in B (0.4 kPa oxygen) when compared with C (0.8 kPa oxygen) samples after 24 DIA.
| GOcat | Ontology | Description | Size | p-value | DEG | Enrichment |
|---|---|---|---|---|---|---|
| GO:0009607 | BP | Response to biotic stimulus | 66 | 2.18E-24 | 22 | OR |
| GO:0006952 | BP | Defense response | 79 | 1.97E-22 | 22 | OR |
| GO:055114 | BP | Oxidation-reduction process | 1811 | 2.82E-14 | 71 | OR |
| GO:0009765 | BP | Photosynthesis, light harvesting | 46 | 6.84E-14 | 13 | OR |
| GO:0006826 | BP | Iron ion transport | 9 | 7.43E-08 | 5 | OR |
| GO:0006879 | BP | Cellular iron ion homeostasis | 9 | 7.43E-08 | 5 | OR |
| GO:0015936 | BP | Coenzyme A metabolic process | 23 | 7.25E-07 | 6 | OR |
| GO:0006468 | BP | Protein phosphorylation | 1492 | 3.37E-06 | 45 | OR |
| GO:0008299 | BP | Isoprenoid biosynthetic process | 30 | 3.92E-06 | 6 | OR |
| GO:0006950 | BP | Response to stress | 98 | 0.000564 | 7 | OR |
| GO:0006412 | BP | Translation | 923 | 1.24E-06 | 0 | UR |
| GO:0016020 | CC | Membrane | 1232 | 0.000285 | 34 | OR |
| GO:0005622 | CC | Intracellular | 1447 | 0.000324 | 7 | UR |
| GO:0005840 | CC | Ribosome | 719 | 2.58E-05 | 0 | UR |
| GO:0016491 | MF | Oxidoreductase activity | 1101 | 1.62E-11 | 48 | OR |
| GO:0008199 | MF | Ferric iron binding | 9 | 7.43E-08 | 5 | OR |
| GO:0005488 | MF | Binding | 64 | 3.50E-07 | 9 | OR |
| GO:0004420 | MF | Hydroxymethylglutaryl-CoA reductase (NADPH) activity | 23 | 7.25E-07 | 6 | OR |
| GO:0016705 | MF | Oxidoreductase activity | 207 | 2.23E-06 | 14 | OR |
| GO:0004163 | MF | Diphosphomevalonate decarboxylase activity | 3 | 3.00E-06 | 3 | OR |
| GO:0004672 | MF | Protein kinase activity | 1486 | 3.04E-06 | 45 | OR |
| GO:0016706 | MF | Oxidoreductase activity | 137 | 5.33E-06 | 11 | OR |
| GO:0005506 | MF | Iron ion binding | 266 | 9.06E-06 | 15 | OR |
| GO:0016841 | MF | Ammonia-lyase activity | 12 | 1.95E-05 | 4 | OR |
| GO:0020037 | MF | Heme binding | 303 | 4.13E-05 | 15 | OR |
| GO:0009055 | MF | Electron carrier activity | 484 | 9.74E-05 | 19 | OR |
| GO:0022857 | MF | Transmembrane transporter activity | 129 | 0.000114 | 9 | OR |
| GO:0016760 | MF | Cellulose synthase (UDP-forming) activity | 42 | 0.000338 | 5 | OR |
| GO:0016597 | MF | Amino acid binding | 44 | 0.000422 | 5 | OR |
| GO:0004452 | MF | Isopentenyl-diphosphate delta-isomerase activity | 3 | 0.000619 | 2 | OR |
| GO:0003735 | MF | Structural constituent of ribosome | 766 | 1.28E-05 | 0 | UR |
GOseq Probability Weighting Function retrieve 27 over-represented (OR) and 4 under-represented (UR) GO terms among DEGs (qval < 0.001 and log2 FC>1).