Table 3.

GO enrichment analysis of genes more expressed in C (0.8 kPa oxygen) when compared with B (0.4 kPa oxygen) samples after 24 DIA.

GOcat	Ontology	Description	Size	p-value	DEG	Enrichment
GO:0055085	BP	Transmembrane transport	662	3.81E-11	28	OR
GO:0006814	BP	Sodium ion transport	38	5.98E-11	9	OR
GO:0005975	BP	Carbohydrate metabolic process	456	2.86E-05	15	OR
GO:0009790	BP	Embryo development	2	8.60E-05	2	OR
GO:0006013	BP	Mannose metabolic process	11	0.000124	3	OR
GO:0005991	BP	Trehalose metabolic process	3	0.000257	2	OR
GO:0006665	BP	Sphingolipid metabolic process	3	0.000257	2	OR
GO:0055114	BP	Oxidation-reduction process	1811	0.000418	32	OR
GO:0006825	BP	Copper ion transport	4	0.00051	2	OR
GO:0016020	CC	Membrane	1232	0.000102	26	OR
GO:0009341	CC	Beta-galactosidase complex	12	0.000164	3	OR
GO:0005758	CC	Mitochondrial intermembrane space	4	0.00051	2	OR
GO:0016021	CC	Integral component of membrane	1007	0.000547	21	OR
GO:0005622	CC	Intracellular	1447	0.000604	3	UR
GO:0016747	MF	Transferase activity, transferring acyl groups other than amino-acyl groups	172	2.48E-16	20	OR
GO:0005215	MF	Transporter activity	161	3.56E-11	15	OR
GO:0004553	MF	Hydrolase activity, hydrolyzing O-glycosyl compounds	256	5.76E-06	12	OR
GO:0000155	MF	Phosphorelay sensor kinase activity	26	9.31E-05	4	OR
GO:0015923	MF	Mannosidase activity	11	0.000124	3	OR
GO:0004565	MF	Beta-galactosidase activity	12	0.000164	3	OR
GO:0022857	MF	Transmembrane transporter activity	129	0.000213	7	OR
GO:0004348	MF	Glucosylceramidase activity	3	0.000257	2	OR
GO:0004555	MF	Alpha, alpha-trehalase activity	3	0.000257	2	OR
GO:0004559	MF	Alpha-mannosidase activity	14	0.000268	3	OR
GO:0016531	MF	Copper chaperone activity	4	0.00051	2	OR
GO:0016702	MF	Oxidoreductase activity	21	0.000933	3	OR
GO:0005515	MF	Protein binding	3238	0.000233	13	UR

GOseq Probability Weighting Function retrieve 25 over-represented (OR) and 2 under-represented (UR) GO terms among DEGs (qval < 0.001 and log₂ FC > 1).