Table 2.
Genetic population parameters defining the population structure of the 83 var. neoformans isolates investigated.
| Locus | Sequence length (bp) | Polymorphic sites | Haplotypes | Haplotype diversity (Hd) | Recombining events | Linkage disequilibrium | Theta (no recombination; free recombination) |
|---|---|---|---|---|---|---|---|
| CAP59 | 560 | 41 | 9 | 0.761 | 4 | No | – |
| GPD1 | 558 | 58 | 5 | 0.241 | 1 | No | – |
| IGS1 | 781 | 57 | 11 | 0.772 | 1 | No | – |
| LAC1 | 481 | 149 | 15 | 0.866 | 20 | No | – |
| PLB1 | 534 | 40 | 7 | 0.584 | 0 | No | – |
| SOD1 | 537 | 73 | 11 | 0.628 | 2 | No | – |
| URA5 | 639 | 55 | 16 | 0.865 | 3 | No | – |
| All loci | 4092 | 425 | 49 | 0.965 | 31 | No | 87.1 (484.0; 17.4) |
Parameters were calculated by DnaSP v.5 software.