Table 2.
Phenotype annotation exported from Leaf Knowtator
| Database columns | Entries |
|---|---|
| File | 21401745.txt.knowtator.xml |
| Class | Phenotype |
| Annotator | Dora Szakonyi, LEAFDATA |
| Spanned text | The rid2-1 mutant was temperature sensitive for seedling growth as well as for callus formation. In rid2-1 seedlings grown at 22 °C, the true leaves were pointed |
| Annotated text | Genotype ID = rid2-1|Property Slot = NULL|Value ID = pointed|Plant part ID = leaves |
| Growth condition | |
| Developmental stage | |
| Plant part | leaf_PO:0025034 |
| Localisation | |
| Property | shape_PATO:0000052 |
| Process | |
| Value | pointed_PATO:0002258 |
| Regulation | |
| Gene expression | |
| Gene studied | |
| Interaction type | |
| Protein studied | |
| Interactor protein | |
| Protein | |
| Gene target | |
| Genetic interactor | |
| DNA target | |
| Genotype ID | mutated gene_MI:0804 |
| Genotype details | Gene ID = AT5G57280 | Genotype_Zygosity = homozygous diploid _APO:0000229 | Mutant LOF_GOF ID = loss of function_APO:0000011 |
| Factuality |
In LEAFDATA, a complex range of information is attached to each displayed statements deposited as spanned text. Different classes have distinct predefined slots however records are converted into a single table. Database columns corresponds to all available Leaf Knowtator slots. File, Annotator, Spanned text and Annotated text information is automatically added to curated statements