Table 3. Determining the limit of variant frequency detection.
Variant frequency (%) | Wild type | Mutant | ||||
---|---|---|---|---|---|---|
Test sample | NGS result | Depth | Forward reads | Reverse reads | Forward reads | Reverse reads |
0.5 | 1.1 | 459 772 | 140 068 | 310 841 | 1665 | 3441 |
1 | 1.9 | 504 779 | 149 572 | 340 835 | 2954 | 6680 |
2 | 2.6 | 463 811 | 124 329 | 323 702 | 3158 | 8805 |
10 | 10.7 | 399 956 | 98 220 | 255 492 | 11 222 | 31 623 |
20 | 19.4 | 440 254 | 350 826 | 118 714 | 26 670 | 58 759 |