Table 2. P-values of 27 pairs of significantly interacted genes identified by FLR.
| Gene 1 | Chr | P-value | Gene 2 | Chr | P-value | P-value | ||||
|---|---|---|---|---|---|---|---|---|---|---|
| Gene 1 | Gene 2 | FLR | PCALR | Collapsing | Pairwise (minimum) | Pairwise (permutation) | ||||
| NR2F2 | 15 | 8.4E−01 | CEP192 | 18 | 9.8E−01 | 6.9E−24 | 6.8E−07 | NA | 3.98E−02 | 5.05E−02 |
| SSPN | 12 | 1.0E−01 | Nbla00526 | 12 | 5.9E−01 | 1.0E−20 | 3.2E−06 | NA | 1.61E−02 | 7.01E−02 |
| GRIK2 | 6 | 3.8E−01 | ATG5 | 6 | 2.6E−01 | 1.5E−20 | 4.3E−06 | NA | 2.75E−04 | 6.41E−02 |
| ZEB2 | 2 | 2.9E−01 | SETMAR | 3 | 4.8E−02 | 1.4E−18 | 4.3E−06 | 7.9E-02 | 1.32E−02 | 5.75E−02 |
| DMGDH | 5 | 6.6E−01 | FHL5 | 6 | 1.3E−01 | 2.0E−17 | 3.3E−06 | NA | 7.76E−02 | 9.97E−02 |
| PTPN22 | 1 | 8.1E−01 | SMARCAL1 | 2 | 7.0E−01 | 2.5E−17 | 5.1E−03 | NA | 8.26E−04 | 1.27E−02 |
| CASC4 | 15 | 6.6E−01 | ARIH1 | 15 | 3.0E−01 | 2.1E−16 | 4.3E−07 | NA | 3.11E−02 | 6.87E−02 |
| RHOBTB3 | 5 | 3.2E−01 | BAI3 | 6 | 3.6E−01 | 4.8E−16 | 8.5E−06 | NA | 8.98E−03 | 9.60E−02 |
| PADI3 | 1 | 4.8E−01 | CHIA | 1 | 7.1E−01 | 8.4E−16 | 1.6E−02 | 1.7E-01 | 1.97E−05 | 6.00E−05 |
| PCDHAC2 | 5 | 5.8E−01 | CYP39A1 | 6 | 9.2E−01 | 1.4E−15 | 5.6E−06 | 1.7E-01 | 4.49E−02 | 6.34E−02 |
| DPP4 | 2 | 2.9E−01 | CHMP2B | 3 | 2.1E−02 | 3.5E−15 | 6.2E−03 | 4.4E-01 | 7.46E−04 | 1.44E−03 |
| KIF24 | 9 | 3.5E−03 | SLC16A12 | 10 | 3.4E−02 | 1.0E−14 | 1.2E−02 | NA | 6.04E−04 | 1.38E−02 |
| GANC | 15 | 1.7E−01 | CIB2 | 15 | 7.7E−01 | 1.2E−14 | 2.7E−03 | NA | 3.73E−03 | 5.34E−03 |
| IFFO2 | 1 | 6.0E−01 | AKT3 | 1 | 7.1E−01 | 4.1E−14 | 1.8E−06 | NA | 4.26E−03 | 7.03E−02 |
| TTC23L | 5 | 6.5E−01 | RICTOR | 5 | 2.2E−01 | 7.6E−14 | 7.4E−06 | NA | 4.47E−03 | 2.79E−02 |
| SCRN1 | 7 | 7.3E−01 | FRMD3 | 9 | 4.6E−01 | 1.0E−13 | 2.6E−07 | NA | 8.79E−03 | 7.43E−02 |
| STX8 | 17 | 4.4E−01 | C2CD2 | 21 | 5.5E−01 | 1.3E−13 | 8.3E−04 | NA | 1.66E−03 | 1.78E−02 |
| IGSF11 | 3 | 6.9E−01 | BST1 | 4 | 7.6E−01 | 9.0E−13 | 8.8E−07 | NA | 2.11E−03 | 4.81E−02 |
| CSNK1A1P | 15 | 8.7E−01 | NCOA3 | 20 | 2.5E−01 | 1.0E−12 | 3.6E−03 | NA | 1.13E−05 | 3.60E−04 |
| NT5C1B | 2 | 4.1E−01 | POU1F1 | 3 | 3.4E−03 | 1.3E−12 | 8.4E−06 | 1.3E-01 | 2.06E−02 | 2.33E−02 |
| LPIN1 | 2 | 5.9E−01 | KAT2B | 3 | 2.4E−01 | 1.4E−12 | 9.0E−06 | NA | 1.09E−02 | 1.00E−01 |
| TPO | 2 | 7.5E−01 | PRKCE | 2 | 1.9E−03 | 2.6E−12 | 2.3E−06 | NA | 1.26E−03 | 8.84E−02 |
| NUP188 | 9 | 7.4E−01 | APBB1IP | 10 | 6.0E−01 | 6.8E−12 | 6.3E−06 | NA | 1.54E−02 | 9.99E−02 |
| LRRC40 | 1 | 3.4E−01 | ST6GALNACV | 1 | 1.0E+00 | 7.0E−12 | 1.3E−01 | NA | 1.40E−05 | 9.79E−05 |
| FANK1 | 10 | 2.3E−01 | UBE4A | 11 | 3.9E−01 | 2.4E−11 | 1.3E−06 | NA | 6.77E−02 | 7.74E−02 |
| XRCC2 | 7 | 1.6E−01 | TTF1 | 9 | 4.9E−01 | 6.0E−10 | 1.0E−05 | NA | 2.05E−01 | 9.24E−02 |
| SGCG | 13 | 4.2E−01 | TUBGCP3 | 13 | 9.8E−01 | 1.2E−09 | 9.5E−02 | NA | 1.35E−03 | 7.24E−03 |