Table 1.

Proteins that bind JCasp are in redbold. Proteins that bind Ccas are in bluethe other entries. Source Data containing all search results, coverage maps, peptide lists and product ion data were uploaded to the PRIDE repository (European Bioinformatics Institute (EBI), Cambridge, UK) with Proteome Xchange identifier #48018. Details of protein identification data related to the proteins discussed in this manuscript can be found in Table1. The table file contains: the list of proteins identified (Column 1); the database accession numbers (Column 2); the spectral counts (SpC, Columns 3-7); Spectral Abundance Factor (SAF, Columns 8-12); subsequent Normalized Spectral Abundance Factor (NSAF, Columns 13-17). This was based on the equation: NSAF = (SpC/MW)/Σ(SpC/MW)N, where SpC = Spectral Counts, MW = Protein MW in kDa and N = Total Number of Proteins, NSAF contains NSAF values without alone.

DOI: http://dx.doi.org/10.7554/eLife.09743.004

		ST	ST-AID	ST	ST-Ccas	ST-JCasp		ST	ST-AID	ST	ST-Ccas	ST-JCasp		ST	ST-AID	ST	ST-Ccas	ST-JCasp
Prot.	Acc. Num.	SpC	SpC	SpC	SpC	SpC		SAF	SAF	SAF	SAF	SAF		NSAF	NSAF	NSAF	NSAF	NSAF
Ddb1	sp|Q3U1J4|	0	418	0	730	0		0.0000	3.2913	0.0000	5.7480	0.0000		0.0000	0.0139	0.0000	0.0366	0.0000
Syt1	sp|P46096|	0	88	0	0	113		0.0000	1.8723	0.0000	0.0000	2.4043		0.0000	0.0079	0.0000	0.0000	0.0129
Stxbp1	sp|O08599|	0	44	0	8	46		0.0000	0.6471	0.0000	0.1176	0.6765		0.0000	0.0027	0.0000	0.0007	0.0036
Cul4a	sp|Q3TCH7|	0	40	0	36	0		0.0000	0.4545	0.0000	0.4091	0.0000		0.0000	0.0019	0.0000	0.0026	0.0000
Sv2b	sp|Q8BG39|	0	55	0	0	66		0.0000	0.7143	0.0000	0.0000	0.8571		0.0000	0.0030	0.0000	0.0000	0.0046
Syngr3	sp|Q8R191|	0	40	0	6	79		0.0000	1.6000	0.0000	0.2400	3.1600		0.0000	0.0068	0.0000	0.0015	0.0170
Cul4b	sp|A2A432|	0	19	0	15	0		0.0000	0.1712	0.0000	0.1351	0.0000		0.0000	0.0007	0.0000	0.0009	0.0000
Stx1b	sp|P61264|	0	23	0	0	31		0.0000	0.6970	0.0000	0.0000	0.9394		0.0000	0.0029	0.0000	0.0000	0.0050
Vamp2	sp|P63044|	0	23	0	0	46		0.0000	1.7692	0.0000	0.0000	3.5385		0.0000	0.0075	0.0000	0.0000	0.0190
Syngr1	sp|O55100|	0	8	0	0	30		0.0000	0.3077	0.0000	0.0000	1.1538		0.0000	0.0013	0.0000	0.0000	0.0062
Sv2a	sp|Q9JIS5|	0	11	0	1	23		0.0000	0.1325	0.0000	0.0120	0.2771		0.0000	0.0006	0.0000	0.0001	0.0015
Snap25	sp|P60879|	0	16	0	12	35		0.0000	0.6957	0.0000	0.5217	1.5217		0.0000	0.0029	0.0000	0.0033	0.0082
Stx1a	sp|O35526|	0	2	0	0	21		0.0000	0.0606	0.0000	0.0000	0.6364		0.0000	0.0003	0.0000	0.0000	0.0034
Stx7	sp|O70439|	0	3	0	0	4		0.0000	0.1000	0.0000	0.0000	0.1333		0.0000	0.0004	0.0000	0.0000	0.0007
Syt2	sp|P46097|	0	15	0	0	36		0.0000	0.3191	0.0000	0.0000	0.7660		0.0000	0.0013	0.0000	0.0000	0.0041
Syt12	sp|Q920N7|	0	3	0	0	10		0.0000	0.0638	0.0000	0.0000	0.2128		0.0000	0.0003	0.0000	0.0000	0.0011
Stx12	sp|Q9ER00|	0	6	0	0	5		0.0000	0.1935	0.0000	0.0000	0.1613		0.0000	0.0008	0.0000	0.0000	0.0009