Table 3.
Expression counts of selected transcripts
| Transcript | CE | CI | CK | EM | FL | HC | HL | HP | HU | IF | LE | LM | LY | PK | PL | PT | RT | SE | TZ | VB | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| a | |||||||||||||||||||||
| C30378 _G1_I1 | 104 | ||||||||||||||||||||
| C7548 _G1_I1 | 497 | 2 | |||||||||||||||||||
| C26754 _G1_I1 | 28 | ||||||||||||||||||||
| C43181 _G1_I1 | 326 | ||||||||||||||||||||
| C49955_G2_I1 | 1 | 2 | 1 | 1 | 3 | 2 | 1 | 2 | 1 | 4 | 185 | ||||||||||
| C62634 _G1_I1 | 123 | ||||||||||||||||||||
| C442 G2 I1 | 24 | ||||||||||||||||||||
| C03 _G1_I1 | 2 | 8 | |||||||||||||||||||
| C28542 _G1_I1 | 18 | 2 | 14 | ||||||||||||||||||
| b | |||||||||||||||||||||
| C9244 _G1_I1 | 8 | ||||||||||||||||||||
| C87 _G1_I1 | 2 | 3 | |||||||||||||||||||
| C61284 _G1_I1 | 12 | 14 | |||||||||||||||||||
| C498 _G1_I1 | 2 | 12 | |||||||||||||||||||
| C6553 _G1_I1 | 8 | ||||||||||||||||||||
| C35196 _G1_I1 | 2 | 2 | 14 | 2 | 10 | ||||||||||||||||
| C50331 G1 I4 | 2 | 1 | 2 | 11 | 1 | 2 | 37 | ||||||||||||||
| C34393 _G1_I1 | 4 | 1 | 4 | 1 | 16 | 3 | 9 | 4 | 2 | 2 | 45 | 12 | 68 | 4 | 2 | 21 | 1 | 2 | 15 | ||
| c | |||||||||||||||||||||
| C50331_G1_I5 | 2 | 13 | 14 | 8 | 2 | 2 | 26 | ||||||||||||||
| C58663 _G1_I1 | 2 | 2 | 10 | ||||||||||||||||||
| C29801 _G1_I1 | 4 | 2 | 16 | ||||||||||||||||||
| C30295 _G1_I1 | 8 | 29 | |||||||||||||||||||
| C16207 _G1_I1 | 54 | ||||||||||||||||||||
| C50331 G1 I2 | 2 | 1 | 4 | 3 | 2 | 2 | 14 | ||||||||||||||
These are raw counts, and are not normalized
a Phytophthora is the pathogen responsible for potato blight, which caused the Great Irish Famine (1845–1849). C30378_G1_I1 encodes a glyceraldehyde 3-phosphate dehydrogenase, an enzyme involved in glycolysis. Most transcripts from this oomycete are found localized in the root (Fig. 2a). b Cryptococcus is the causal agent of cryptococcosis, affecting immuno-compromised individuals. These fungi are mostly localized in the catkins and the vegetative buds. It was previously shown that the plant surface provides a conducive environment for the sexual cycle of these pathogens. c Pyrenophora: These fungi, responsible for the `tan spot’ disease in barley, are spread out throughout different tissues. d Acyrthosiphon: The pea aphid pest. C58762_G1_I1 encodes a 91 long ORF that has a 99 % identity match to the ribosomal protein L37 (Accession: NP 001129424.1). The low counts of this transcript are testimony to the ability of the RNAseq technology to accurately determine the sequence and localization of transcripts