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. 2016 Feb 17;6:21600. doi: 10.1038/srep21600

Table 3. Summary table of selected differentially expressed M. × domestica ‘Golden delicious’ genes challenged with E. amylovora.

Description M. × domestica accessions Name Expression A. thaliana accessions Gene description
Jasmonate MDP0000241358 JAZ2, TIFY10B Up AT1G74950.1 TIFY domain/Divergent CCT motif family protein
  MDP0000242554 JAI1, JIN1, MYC2 Up AT1G32640.1 Basic helix-loop-helix (bHLH) DNA-binding family protein
    JAZ10, JAS1, TIFY9 Up AT5G13220.4 Jasmonate-zim-domain protein 10
Ethylene MDP0000805422 ERF-1 Up AT4G17500.1 Ethylene responsive element binding factor 1
  MDP0000679280 RAP2.3, ATEBP, EBP Up AT3G16770.1 Ethylene-responsive element binding protein
  MDP0000689946 ERF2 Up AT5G47220.1 Ethylene responsive element binding factor 2
  MDP0000251295 EFE, ACO4, EAT1 Up AT1G05010.1 Ethylene-forming enzyme
    ACS6 Up AT4G11280.1 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6
    ACS6 Up AT4G11280.1 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6
  MDP0000127134 ERF1 Up AT3G23240.1 Ethylene response factor 1
  MDP0000167207 ERF1 Up AT3G23240.1 Ethylene response factor 1
  MDP0000920189 ETR2 Up AT3G23150.1 Signal transduction histidine kinase, hybrid-type, ethylene sensor
Phenylpropanoid MDP0000388769 PAL1 Up AT2G37040.1 PHE ammonia lyase 1
  MDP0000168735 CHS, TT4 Up AT5G13930.1 Chalcone and stilbene synthase family protein
  MDP0000716308 CHS, TT4 Up AT5G13930.1 Chalcone and stilbene synthase family protein
  MDP0000287919 CHS, TT4 Up AT5G13930.1 Chalcone and stilbene synthase family protein
    CHS, TT4 Up AT5G13930.1 Chalcone and stilbene synthase family protein
  MDP0000302905 CHS, TT4 Up AT5G13930.1 Chalcone and stilbene synthase family protein
  MDP0000208899 CHS, TT4 Up AT5G13930.1 Chalcone and stilbene synthase family protein
  MDP0000134791   Down AT5G05270.1 Chalcone-flavanone isomerase family protein
  MDP0000523487 TT5, A11, CFI Up AT3G55120.1 Chalcone-flavanone isomerase family protein
Pathogenesis-related MDP0000348327   Down AT1G12663.1 Pathogenesis-related plant thionin (PR-13) family protein
      Up AT4G33720.1 Cysteine-rich secretory protein, Antigen 5, and PR 1 superfamily
  MDP0000246775   Up AT1G75800.1 Pathogenesis-related thaumatin (PR-5) superfamily protein
  MDP0000552328   Up AT1G75800.1 Pathogenesis-related thaumatin (PR-5) superfamily protein
  MDP0000218699   Up AT1G75800.1 Pathogenesis-related thaumatin (PR-5) superfamily protein
  MDP0000788170   Up AT1G78780.2 Pathogenesis-related family protein
  MDP0000782085 PR4, HEL, PR-4 Up AT3G04720.1 Pathogenesis-related 4
      Up AT4G33720.1 Cysteine-rich secretory proteins, Antigen 5, and PR1 superfamily
  MDP0000362305 LCR69, PDF2.2 Down AT2G02100.1 Low-molecular-weight cysteine-rich 69, plant defensin family
  MDP0000132621   Up AT5G43580.1 Belongs to the PR-6 proteinase inhibitor family
  MDP0000694597 LTP3 Down AT5G59320.1 Lipid transfer protein 3. Predicted to encode a PR-14 family protein
  MDP0000661371 LTP3 Down AT5G59320.1 Lipid transfer protein 3. Predicted to encode a PR-14 family protein
  MDP0000304369 LTP3 Down AT5G59320.1 Lipid transfer protein 3. Predicted to encode a PR-14 family protein
  MDP0000280265 CHIA Down AT5G24090.1 Chitinase A. Predicted to encode a PR-8 protein
Leucine-rich repeat MDP0000315498 DRT100 Down AT3G12610.1 Leucine-rich repeat (LRR) family protein
  MDP0000392201   Down AT3G20820.1 Leucine-rich repeat (LRR) family protein
  MDP0000207774   Down AT3G20820.1 Leucine-rich repeat (LRR) family protein
  MDP0000281307   Up AT5G07910.1 Leucine-rich repeat (LRR) family protein
  MDP0000303781   Up AT1G15740.1 Leucine-rich repeat (LRR) family protein
      Up AT5G66900.1 Disease resistance protein (CC-NBS-LRR class) family
  MDP0000171644   Up AT5G66900.1 Disease resistance protein (CC-NBS-LRR class) family
  MDP0000287351   Up AT5G36930.2 Disease resistance protein (TIR-NBS-LRR class) family
  MDP0000222184   Up AT5G36930.2 Disease resistance protein (TIR-NBS-LRR class) family
      Up AT5G45230.1 Disease resistance protein (TIR-NBS-LRR class) family
  MDP0000178868   Down AT5G17680.1 Disease resistance protein (TIR-NBS-LRR class) family
  MDP0000685425   Up AT5G17680.1 Disease resistance protein (TIR-NBS-LRR class) family
  MDP0000146255   Up AT3G14470.1 NB-ARC domain-containing disease resistance protein
  MDP0000182716   Up AT3G14470.1 NB-ARC domain-containing disease resistance protein
Photosynthesis MDP0000708928 LHCB2.2, LHCB2 Down AT2G05070.1 Photosystem II light harvesting complex gene 2.2
  MDP0000757636 LHCB4.2 Down AT3G08940.2 Light harvesting complex photosystem II
  MDP0000656154 LHB1B1, LHCB1.4 Down AT2G34430.1 Light-harvesting chlorophyll-protein complex II subunit B1
  MDP0000417927 LHB1B1, LHCB1.4 Down AT2G34430.1 Light-harvesting chlorophyll-protein complex II subunit B1
  MDP0000417929 LHB1B1, LHCB1.4 Down AT2G34430.1 Light-harvesting chlorophyll-protein complex II subunit B1
  MDP0000601491 LHB1B1, LHCB1.4 Down AT2G34430.1 Light-harvesting chlorophyll-protein complex II subunit B1
  MDP0000235175 LHB1B1, LHCB1.4 Down AT2G34430.1 Light-harvesting chlorophyll-protein complex II subunit B1