Table 2. The top ten significant haplotypes with the polycerate phenotype.
LD Block | Haplotype | Position |
Frequency |
P-value | P100,000 | ||
---|---|---|---|---|---|---|---|
first | last | Case | Control | ||||
6085 | AGAG | 133040292 | 133065679 | 0.727 | 0.104 | 1.14E-09 | <0.00001 |
6086 | AGGGA | 133072339 | 133084414 | 0.727 | 0.104 | 1.14E-09 | <0.00001 |
6084 | GAGCA | 133008423 | 133017771 | 0.727 | 0.125 | 4.61E-09 | <0.00001 |
6081 | ACCGA | 132934057 | 132951006 | 0.705 | 0.146 | 5.43E-08 | 0.0005 |
6083 | AAAG | 132978078 | 132994332 | 0.705 | 0.146 | 5.43E-08 | 0.0005 |
11095 | GA | 240198021 | 240198140 | 0.136 | 0.646 | 6.42E-07 | 0.0096 |
6125 | GGAG | 133917957 | 133928107 | 0.455 | 0.021 | 7.38E-07 | 0.0105 |
6107 | GGGG | 133560053 | 133564962 | 0.841 | 0.333 | 8.60E-07 | 0.0120 |
11110 | AGACC | 240440866 | 240460254 | 0.592 | 0.106 | 8.82E-07 | 0.0120 |
6097 | GCGGGG | 133339051 | 133365628 | 0.523 | 0.062 | 9.72E-07 | 0.0128 |
P100,000 represents P-value with 100,000 permutations in the association tests; LD denotes linkage disequilibrium.