Table 1. Gene-specific primers and amplicon characteristics of candidate reference genes and target genes used in qRT-PCR analysis.
Gene name | Length (bp) | Tm (°C) | Amplification efficiency (%) | R2 | 5′-sequence (forward primer) | 3′-sequence (reverse primer) |
---|---|---|---|---|---|---|
18S | 256 | 85.44 | 97.76 | 0.992 | GCGGCTTAATTTGACTCAACACG | CCTGTTATTGCCTCAAACTTCC |
28S | 154 | 85.78 | 92.89 | 0.998 | GCCGACCCTGATCTTCTGTGA | TACCCAAGTCAGACGAACGATT |
ACTIN | 149 | 82.27 | 93.34 | 0.996 | CCAAAGGCCAACAGAGAGAAGAT | TGAGACACACCATCACCAGAAT |
β-TUB | 223 | 85.47 | 94.36 | 0.999 | CCTTATTCCATTCCCCAGGCTTC | CATCTGCTCATCAACCTCCTTTGTGC |
GAPDH | 162 | 83.37 | 93.75 | 0.998 | GTTTTCACTGACAAGGACAAGGCTGCTG | GGTGGTACAACTGGCATTGGAGAC |
UBQ | 127 | 81.39 | 93.18 | 0.999 | GCTAAGATTCAAGACAAGGAGGGTATC | CCAGGTGGAGGGTTGATTCTTTCTG |
PPDK | 144 | 80.49 | 95.93 | 0.994 | CTGTCCCAGGAGTCAAACAC | CACTGAACTAACTGCTTCCGA |
SAT | 168 | 88.35 | 97.12 | 0.994 | GAGTATCTCCGAAGAGCCGAG | GCATCCTCACCATCCTTCTC |