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. 2015 Jul 23;31(22):3593–3599. doi: 10.1093/bioinformatics/btv422

Fig. 1.

Fig. 1.

TEtranscripts flow chart. Reads mapping to TEs are assigned in two different modes: uniq (reads mapping uniquely in the genome), and multi (reads mapping to multiple insertions of TEs). In the multi mode, an iterative algorithm is used to optimally distribute ambiguously mapped reads