Fig. 3.

Evaluating multi-sample studies. (a) Number of hg19 isoform DE calls ($|\text{FC}|>3$) with S_k = 3 MiSeq samples per group, 3 MiSeq + 3 HiSeq from GSE37704 (black) and simulations for $S_{\text{k}}=6,9$ based on S_k = 3 (grey). (b) DE calls for GENCODE v18 transcripts with $S_{\text{k}}=2,3,4,5$ per group from GSE47912 (black) and simulations based on S_k = 2 (grey)