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. 2015 Dec 26;27(1):41–47. doi: 10.1007/s13337-015-0295-3

Fig. 1.

Fig. 1

Phylogenetic analysis (Maximum-likelihood) of the L1 gene (region: MY09/MY11). Rhesus monkey papillomavirus (M60184) was used as outgroup. The asterisk indicates a new variant. a Tree of isolates of HPV 16 found in this study (HPV 16 V0, V1, V2, V3 and V4), along with HPV reference sequence [NC_001526.2 (RefSeq European HPV16/A1)] and variants of HPV 16 retrieved from GenBank: (East-Asian (EA) (A4): AF534061.1, European (A3): HQ644236.1, European-German (A2): AF536179.1, African 1a (B): AF536180.1, African 1b (B2): HQ644298.1, North American (B1): HQ644298.1, African 2 (C): AF472509.1, Asian-American (D2): AY686579.1 and Asian-American (D3): AF402678.1). b Tree of isolates of HPV 58 found in this study (HPV 58 V0, V1, V2 and V3), along with HPV reference sequence [D90400.1 A1 (RefSeq HPV 58)] and variants of HPV 58 retrieved from GenBank: lineage A1: D90400.1 A1, A2: AB819278.1, A3: AB819279.1, B1: HQ537763.1, B2: HQ537765.1, C: HQ537772.1, D1: D2 and HQ537767.1: HQ537769.1. c Tree of isolates of HPV 31 found in this study (HPV 31 V0, V1, V2, V3, V4, V5, V6 and V7), along with HPV reference sequence [J04353.1 (HPV 31 RefSeq A1)] and variants of HPV 31 retrieved from GenBank: A2: HQ537675.1, B1: HQ537676.1, B2: HQ537680.1, C1: HQ537682.1, C2 and C3 HQ537684.1: HQ537685.1. d Tree of isolates of HPV 18 found in this study (HPV 18 V0, V1, V2 and V3), along with HPV reference sequence [AY262282.1 (RefSeq HPV 18)] and variants of HPV 18 retrieved from GenBank: A1 [European 1-Asian-American (E1-AA): AY262282.1; A2 (E1-AA): EF202146.1; A3 (European 2 (E2)]: EF202147.1; A4 (E2): EF202151.1; A5 (E): GQ180787.1; B1 (African 1 (Af1)): EF202155.1; B2 (Af): KC470225. 1; B3 (Af2): EF202152.1 and C (Af): KC470229.1). e Tree of isolates of HPV 6 found in this study (HPV 6 V0, V1, V2, V3, V4, V5 and V6), along with HPV reference sequence [AF092932.1 (HPV 6 RefSeq)] and variants of HPV 6 retrieved from GenBank: A: X00203.1, B1: FR751337.1, B2 and B3 FR751328.1: L41216.1. f Tree of isolates of HPV 11 found in this study (HPV 11 V0 and V1), along with HPV reference sequence [FR872717.1 (HPV 11 RefSeq)] and variants of HPV 6 retrieved from GenBank: A1 and A2 M14119.1: FN907962.1