Table 3.
Nucleotide and amino acid sequence variation in sequences of L1 gene (region: MY09/MY11) of HPV 31 (16 samples)
| L1 nucleotide position | 6568 | 6586 | 6742 | 6772 | 6778 | 6796 | 6817 |
|---|---|---|---|---|---|---|---|
| Non-synonymous mutations | – | – | – | – | – | – | – |
| HPV 31 Ref (J04353.1) | T | T | T | G | A | G | A |
| V0 (9) | – | G | – | – | – | A | C |
| V1 (1) | C | – | – | A | – | A | C |
| V2 (1) | – | G | – | – | G | A | C |
| V3 (1) | – | – | – | – | – | – | – |
| V4 (1) | – | – | – | A | – | A | C |
| V5 (1) | – | – | – | A | – | A | C |
| V6 (1) | C | – | C | A | – | A | C |
| V7 (1) | – | – | – | A | – | A | C |
The coordinates refer to the first nucleotide of each specific HPV reference sequence used. Isolates found in this study were designated as HPV 31 V0, V1, V2, V3, V4, V5, V6 and V7. The number of isolates with identical sequences is indicated in parentheses