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. 2016 Mar 2;4:103. Originally published 2015 May 1. [Version 2] doi: 10.12688/f1000research.6358.2

Table 1. Data sources used to compile UPR gene sets.

Gene set Sub-classification Number of
genes
Total number of
unique genes
UPR-KEGG-GO Pathway 265
KEGG:04141: Protein processing in ER 165
REACTOME: Unfolded protein response 79
Gene ontology
GO:003043: ER-associated ubiquitin-dependent protein catabolic process 38
GO:0030968: endoplasmic reticulum unfolded protein response 89
GO:0034976: response to endoplasmic reticulum stress 142
UPR-Interactions Interactions 281
ATF4 92
ATF6 34
DDIT3 73
EIF2AK3 13
ERN1 37
XBP1 111
UPR-Literature Publications (High through-put experiments) 1675 2048
Study Species Method
Labunskyy VM et al. 31 Yeast Ribosome profiling coupled with NGS 189
Travers KJ et al. 32 Yeast DNA microarray 745
Jonikas MC et al. 33 Yeast Synthetic genetic array methodology &
High-throughput flow cytometry
1262
Christianson JC et al. 34 Human Affinity purification, LC-MS/MS,
High-throughput Y2H
75
GeneCards
GeneCards: ER-Stress 275
GeneCards: Unfolded Protein Response 325