Table 1. Summary of Illumina sequencing and transcriptome assemblies for RNA-Seq libraries.
Sample | Reads (PE) | Length | Total bases (×100bp) | GC%a | Mapping (ratio) | Unique | FPKM >3 |
---|---|---|---|---|---|---|---|
0.25 DPI | 27,086,424×2 | 100,100 | 54,172,848 | 43,43 | 45,396,150 (84%) | 18,770,088×2 | 20,298 |
0.5 DPI | 27,961,332×2 | 100,100 | 55,922,664 | 43,43 | 47,263,043 (85%) | 19,721,325×2 | 19,385 |
1 DPI | 26,009,438×2 | 100,100 | 52,018,876 | 43,43 | 44,250,820 (85%) | 18,602,589×2 | 19,789 |
4 DPI | 23,420,903×2 | 100,100 | 46,841,806 | 43,43 | 39,345,176 (84%) | 16,267,657×2 | 20,543 |
7 DPI | 27,215,622×2 | 100,100 | 54,431,244 | 43,44 | 45,964,650 (84%) | 20,190,441×2 | 20,104 |
12 DPI | 28,951,315×2 | 100,100 | 57,902,630 | 43,43 | 47,795,838 (83%) | 19,968,169×2 | 21,123 |