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. 2016 Feb 18;11(2):e0149089. doi: 10.1371/journal.pone.0149089

Table 6. A brief summary of RF modelling process for hard70 data using various FS methods and predictive variables.

1) models 1–25 based on the AVI using 20 variables; 2) models 26–38 based on the AVI using 41 variables; 3) models 39–49 based on KIAVI using 41 variables; and 4) models 50–52 based on the Boruta with the maximal number of importance source runs of 2000, 100 and 5000, and model 53 based on the RRF using 41 variables. The model fit is the predictive accuracy (ccr) of training samples by each RF model developed. The corresponding predictor for each number is listed in Table 1.

Model Modelling.process Predictors No.predictors Model.fit
1 All 20 predictive variables All 20 variables 20 100
2 model 1: -relief 1–7, 9–20 19 100
3 model 2: -northing 1, 3–7, 9–20 18 100
4 model 3: -bs13 1, 3–7, 9–11, 13–20 17 100
5 model 4: -bs27 1, 3–7, 9–11, 13–14, 16–20 16 100
6 model 5: -slope 1, 3, 4–7, 10–11, 13–14, 16–20 15 100
7 model 6: -bs25 1, 3–7, 10–11, 13, 16–20 14 100
8 model 7: -bs21 1, 3–7, 10–11, 16–20 13 100
9 model 8: -bathy.moran 1, 3–4, 6–7, 10–11, 16–20 12 100
10 model 9: -surface 1, 3–4, 6–7, 11, 16–20 11 100
11 model 10: -bathy 1, 3, 6–7, 11, 16–20 10 100
12 model 11: -tpi 1, 3, 6–7, 16–20 9 100
13 model 12: -bs35 1, 3, 6–7, 16, 18–20 8 100
14 model 13: -variance 1, 3, 6–7, 16, 18, 20 7 100
15 model 14: -bs.moran 1, 3, 6–7, 16, 18 6 100
16 model 15: -bs32 1, 3, 6–7, 18 5 100
17 model 16: -easting 3, 6–7, 18 4 100
18 model 17: -profile.curv 3, 6, 18 3 96.43
19 model 18: -homogeneity 3, 6 2 95
20 model 19: -planar.curv 3 1 91.43
21 model 11: +bs21 1, 3, 6–7, 11, 13, 16–20 11 100
22 model 21: +bathy.moran 1, 3, 5–7, 11, 13, 16–20 12 100
23 model 21: -profile.curv 1, 3, 6, 11, 13, 16–20 10 100
24 model 21: -bs.moran 1, 3, 6–7, 11, 13, 16–19 10 100
25 model 24: -variance 1, 3, 6, 7, 11, 18, 13, 16, 17 9 100
26 All 41 predictors 1–11, 18–20, bs10-bs36 41 100
27 model 26:—bs25, bs10:bs14 1–11, 18–20, bs15-bs36 35 100
28 model 27:—bathy, relief, bs24,bs26, bs27 1–3, 5–7, 9–11, 18–20, bs15-bs23, bs28-bs36 30 100
29 model 28:—bs20, bs29, bs30, bs36 1–3, 5–7, 9–11, 18–20, bs15-bs19, bs21-bs23, bs28, bs31-bs35 26 100
30 model 29:—nothing and bs28 1, 3, 5–7, 9–11, 18–20, bs15-bs19, bs21-bs23, bs31-bs35 24 100
31 model 30:—slope and bs34 1, 3, 5–7, 10, 11, 18–20, bs15 to bs19, bs21-bs23, bs31-bs33, 17 22 100
32 model 31-—bs15, bs16, bs19, bs21, bs32, bs33 and bs 35 1, 3, 5–7, 10, 11, 18–20, bs17, bs18, bs22, bs23, bs31 15 100
33 model 32-—bathy.moran, surface, bs17 and bs22 1, 3, 6–7, 11, 18–20, bs18, bs23, bs31 11 100
34 model 33-—homogeneity 1, 3, 6–7, 11, 19–20, bs18, bs23, bs31 10 100
35 model 34-—tpi 1, 3, 6–7, 19–20, bs18, bs23, bs31 9 100
36 model 35-—bs23 1, 3, 6–7, 19–20, bs18, bs31 8 100
37 model 36-—bs18 1, 3, 6–7, 19–20, bs31 7 100
38 model 37-—bs.moran 1, 3, 6–7, 19, bs31 6 100
39 Variables for model 24, 33, and model 40 for hard90 1–3, 6–7, 10–11, 13, 18–20, bs10, bs18, bs23, bs28-bs36 23 100
40 model 39-—bs10 1–3, 6–7, 10–11, 13, 18–20,bs18, bs23, bs28-bs36 22 100
41 model 40-—bs28, bs30 abd bs36 1–3, 6–7, 10–11, 13, 18–20, bs18, bs23, bs29, bs31-17 19 100
42 model 41-—northing 1, 3, 6–7, 10–11, 13, 18–20, bs18, bs23, bs29, bs31-17 18 100
43 model 42-—bs35 1, 3, 6–7, 10–11, 13, 18–20, bs18, bs23, bs29, bs31-bs34 17 100
44 model 43-—bs29 and bs34 1, 3, 6–7, 10–11, 13, 18–20,bs18, bs23, bs31-bs33 15 100
45 model 44-—bs21 1, 3, 6–7, 10–11, 18–20,bs18, bs23, bs31-bs33 14 100
46 model 45-—bs33 1, 3, 6–7, 10–11, 16, 18–20,bs18, bs23, bs31 13 100
47 model 46-—surface 1, 3, 6–7, 11, 16, 18–20,bs18, bs23, bs31 12 100
48 model 47-—tpi 1, 3, 6–7, 16, 18–20,bs18, bs23, bs31 11 100
49 model 47-—tpi and bs31 1, 3, 6–7, 16, 18–20, bs18, bs23 10 100
50 27 predictors 1, 3, 7, 11, bs12, bs13, bs16-bs36 27 100
51 model 50-—easting, bs12 2–3, 7, 11, 20, bs13, bs16-bs36 25 100
52 model 50- +bs10, bs14 1, 3, 7, 11, bs10, bs12-bs14, bs16-bs36 29 100
53 31 predictors 1–3, 5, 7–11, 18–20, bs15, bs17-bs18, bs20-bs25, bs27-bs36 31 100