Table 1.
A listing of resources closely related to the Human Physiome community.
| resource | description | link |
|---|---|---|
| BioModels Database [54] | a repository of computational models of biological processes. Models described from the literature are manually curated and enriched with cross-references. The BioModels Database is a static archive of the models with periodic releases of the database made available in the Public Domain. | http://www.ebi.ac.uk/biomodels-main/ |
| JWS Online [55] | systems biology tool for the construction, modification and simulation of kinetic models and for the storage of curated models. | http://jjj.mib.ac.uk/ |
| The Drug Disease Model Resources (DDMoRe) Repository | provides a platform for sharing computational models used to describe the interactions between drugs and patients. This public, open-access repository allows users to encode their model in a single format that can be converted seamlessly and executed in commonly used software packages. The system can host both, publicly shared and private models and can store models in PharmML or MDL. | http://repository.ddmore.eu |
| The VPH-Share Portal | an online environment for the development, construction and storage of workflows for biomedical research and modelling. It is designed to support researchers, clinicians and software developers sharing their resources and provides an online infrastructure which allows users to share and access biomedical data, tools and workflows. VPH-Share was created through a 4-year, European FP7 funded project, which brought together 21 international partners from industry, academia and healthcare. | https://portal.vph-share.eu |
| The p-medicine portal | provides an integrative platform to clinicians, patients and researchers to collaborate, share data and expertise, and use tools and services to improve the personalized treatment of patients. The current version of the portal contains an initial functionality of the p-medicine security framework, data mining tools, p-medicine Workbench, Ontology Annotator as well as ObTiMA, an ontology-based clinical trial management system for designing and conducting clinical trials. | http://p-medicine.eu/tools/p-medicine-portal/ |
| The Quantiative Kidney DataBase [56,57]. | makes kidney-related physiological data easily available. The emphasis is on published experimental results relevant to quantitative renal physiology, with a particular focus on data relevant for evaluation of parameters in mathematical models of renal function. | http://physiome.ibisc.fr/qkdb/ |
| The Kidney Systems Biology Project | makes available curated transcriptomic and proteomic databases for the various renal tubule epithelia compiled from published papers. | http://helixweb.nih.gov/ESBL/Database/ |