Table S3.
Primers for real-time qRT-PCR and SHM used in this study
| qRT-PCR or SHM | Primer/probe | Source |
| Real-time qRT-PCR | ||
| Cd79a | Mm00432423_m1 | Applied Biosystems |
| Gapdh | Mm99999915_g1 | Applied Biosystems |
| IgH primary transcripts | ||
| IgHWT for | 5′TTCTGAGCATTGCAGACTAATCTTG3′ | (31) |
| IgHWT rev | 5′CCTAGACAGTTTATTTCCCAACTTCTC3′ | (31) |
| IgHWT probe | 5′CCCTGAGGGAGCCG3′ | (31) |
| Germ-line transcripts | ||
| Iμ-Cμ for | 5′ACCTGGGAATGTATGGTTGTGGCTT3′ | (46) |
| Iμ-Cμ rev | 5′TCTGAACCTTCAAGGATGCTCTTG3′ | (46) |
| Iγ3-Cγ3 for | 5′AACTACTGCTACCACCACCACCAG3′ | (46) |
| Iγ3-Cγ3 rev | 5′ACCAAGGGATAGACAGATGGGG3′ | (46) |
| Iγ1-Cγ1 for | 5′GGCCCTTCCAGATCTTTGAG3′ | (46) |
| Iγ1-Cγ1 rev | 5′ATGGAGTTAGTTTGGGCAGCA3′ | (46) |
| Iγ2b-Cγ2b for | 5′CCAACCAGGAAGAGTCCAGAG3′ | (48) |
| Iγ2b-Cγ2b rev | 5′ACAGGGATCCAGAGTTCCAAGT3′ | (48) |
| Iγ2a-Cγ2a for | 5′GCTGATGTACCTACCGAGAGA3′ | (46) |
| Iγ2a-Cγ2a rev | 5′GCTGGGCCAGGTGCTCGAGGTT3′ | (46) |
| Iα-Cα for | 5′CTACCATAGGGAAGATAGCCT3′ | (47) |
| Iα-Cα rev | 5′TAATCGTGAATCAGGCAG3′ | (47) |
| LNC-RNA for CSR transcripts | ||
| Lnc-RNA-CSR for | 5′-CACATTTGATTGCCTCTCCACTTG-3′ | (38) |
| Lnc-RNA-CSR rev | 5′-AAAACATCCCTCCAACCAGTCAC-3′ | (38) |
| SHM | ||
| IgH locus | ||
| VHJ558 family for | 5′GCGAAGCTTARGCCTGGGRCTTCAGTGAAG3′ | (9) |
| 5′MAREμ rev | 5′CAGCAACTACCCTTTTGAGACCGA3′ | Present study |
| Igκ locus | ||
| Igκ for | 5′GGCTGCAGSTTCAGTGGCAGTGGRTCWGGRAC3′ | (31) |
| Igκ rev | 5′AGCGAATTCAACTTAGGAGACAAAAGAGAGAAC3′ | (31) |