Table 1.
PDB IDa | Li et al. model (2011)b |
von der Ecken et al. model (2014)c |
---|---|---|
1C1G | 1.91 | 4.76 |
1IC2 | 1.15 | 1.39 |
1KQL | 1.26 | 1.71 |
3U1A | 0.89 | 1.46 |
3U59 | 1.51 | 1.92 |
2D3E | 1.65 | 2.85 |
2B9C | 1.31 | 1.56 |
Root-mean-square deviation (RMSD) for the Cα-backbone atoms between tropomyosin models and crystal structures, after alignment with the rmsd-plugin of the program VMD (Humphrey et al. 1996)
The splayed or non-coiled-coil ends of the crystal structures were truncated prior to RMSD calculation, the employed residues are: 1C1G, Whitby-Phillips model (2000), residues 50–175 (same as segment shown in Fig. 2a). 1IC2, N-terminal 81 residues (striated muscle α-tropomyosin, Brown et al. (2001)). 1KQL, C-terminal 31 residues (rat striated muscle α-tropomyosin, Li et al. (2002)). 3U1A, N-terminal 81 residues (chicken gizzard smooth muscle α-tropomyosin, Rao et al. (2012)). 3U59, N-terminal 98 residues (chicken gizzard smooth muscle α-tropomyosin, Rao et al. (2012)). 2D3E, 134 C-terminal residues (rabbit striated muscle α-tropomyosin, Nitanai et al. (2007)). 2B9C, residues 98–175 (rat striated muscle α-tropomyosin, Brown et al. (2005))
Li et al. (2011) model, shown in Fig. 1a, 2b and 3a
von der Ecken et al. (2014) model, shown in Fig. 1b and 2c