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. 2015 Sep 25;15(1):266–288. doi: 10.1074/mcp.M115.051961

Table III. The differential expressed proteins that were identified (LC-MSMS) between two variants. Note: “-” indicates no detectable signal been found in sample collected at this (these) time point(s); the amount of “+” shows the number of detectable signal(s) been found in sample collected at this (these) time point(s).

Protein description Accession No. Soybean Gene IDs Wenfeng07
 Union 85140
Control Stress Control Stress
14-3-3 protein Q8LJR3 Glyma18g53610.1 − + − −
2-hydroxyisoflavanone dehydratase Q5NUF3 Glyma01g45020.1 − + − +++++
Alcohol-dehydrogenase Q9ZT38 Glyma04g41990.1 − − − +
ascorbate peroxidase 1 Q76LA8 Glyma11g15680.5 − ++++++ + ++++++
ascorbate peroxidase 2 Q39843 Glyma12g07780.3 + − − +
Auxin response factor K7KH37 Glyma03g41920.2 − − − +
Auxin-induced protein AUX22 P13088 Glyma08g22190.1 − − − +
Catalase-1/2 P29756 Glyma17g38140.1 − ++++++ + +++++
Catalase-3 O48560 Glyma14g39810.1 − ++++ − +++
Chalcone isomerase 4B Q53B71 Glyma04g40030.1 − + − +
Chalcone synthase Q6X0M9 Glyma05g28610.2 − + − −
Chalcone synthase 1 P24826 Glyma08g11620.1 − + − −
Chalcone synthase 2 P17957 Glyma08g11630.2 − + − −
Chalcone synthase 3 P19168 Glyma08g11635.1 − + − −
Chalcone synthase 5 P48406 Glyma01g43880.1 − + − −
Chalcone synthase 7 P30081 Glyma08g11530.1 − +++ + +
Chalcone synthase 9 B3F5J6 Glyma08g11610.1 − + − −
Chalcone synthase CHS4 Q6X0N0 Glyma08g11520.1 − + − −
Chalcone-flavonone isomerase family protein Q6X0M8 Glyma01g22880.1 − + − −
Cytochrome P450 monooxygenase Q2LAJ9 Glyma07g14460.1 − + − −
Cytochrome P450 monooxygenase Q2LAL0 Glyma09g05440.1 − − − +
Ethylene-responsive transcription factor 6 C6T283 Glyma12g35550.1 − + − −
Eukaryotic translation initiation factor 3 I1JPD4 Glyma03g32950.5 − ++ − +++
Eukaryotic translation initiation factor 3 I1JK05 Glyma03g00470.1 − ++ − ++
Eukaryotic translation initiation factor 3 I1JQD9 Glyma03g36470.1 − +++++ − ++
Eukaryotic translation initiation factor 3 I1M228 Glyma13g31200.1 − ++ − ++
Eukaryotic translation initiation factor 3 C6TC72 Glyma18g03340.1 − + − −
Eukaryotic translation initiation factor 3 I1KXJ9 Glyma08g40110.1 − + − +
Eukaryotic translation initiation factor 3 C6TL4 Glyma12g00510.1 − + − ++
Eukaryotic translation initiation factor 3 I1L3W4 Glyma09g29540.1 − + − +
Eukaryotic translation initiation factor 3 I1JUS7 Glyma04g08570.1 − + + +
Eukaryotic translation initiation factor 3 C6TED0 Glyma20g22090.1 − − + +
Ferritin Fer182 I1MYZ9 Glyma18g02800.2 − − − +
Glutamate receptor I1KFC6 Glyma06g46130.1 − + − −
Glutathione S-transferase GST 15 Q9FQE3 Glyma10g33650.1 − − − +
Glutathione S-transferase GST 24 Q9FQD4 Glyma14g03470.1 − − − ++
Glutathione S-transferase GST 8 Q9FQF0 Glyma07g16910.1 + ++ − +++
Glyceraldehyde-3-phosphate dehydrogenase Q38IX0 Glyma04g01750.1 − − − ++
Heat shock protein 90–2 B6EBD6 Glyma14g01530.1 − +++++ − ++++
Histone H2A OS C6SV65 Glyma19g42760.1 + ++++ + +
Hsp70-Hsp90 organizing protein 1 Q43468 Glyma17g14660.1 − + − +
Hypersensitive induced reaction protein 1 G8FVT3 Glyma19g02370.1 − − − ++
Hypersensitive induced reaction protein 3 G8FVT2 Glyma05g01360.3 − − + ++
Isoflavone reductase homolog 2 Q9SDZ0 Glyma04g01380.1 − +++++ + ++++++
KS-type dehydrin SLTI629 A9XE62 Glyma19g29210.1 − − − +
Late-embryogenesis abundant protein 1 C6TLT7 Glyma14g04180.1 − ++++++ + ++++++
Leucine-rich repeat family protein/protein kinase family protein C6ZRY3 Glyma10g08010.1 − − − ++
Lysine–tRNA ligase I1L9B1 Glyma10g08040.1 − + − −
MATE efflux family protein I1K9K1 Glyma06g09550.1 − + − −
Mitochondrial phosphate transporter O80412 Glyma19g27380.2 + +++++ + ++++++
Mitochondrial Rho GTPase I1LBC8 Glyma10g29580.1 − + − −
Mitogen-activated protein kinase 2 Q5K6N6 Glyma02g15690.2 − + − +
MYB transcription factor MYB107 Q0PJJ3 Glyma08g20270.1 − + − −
MYB transcription factor MYB130 Q0PJG6 Glyma01g40220.1 − + − −
MYB transcription factor MYB91 Q0PJH2 Glyma07g00930.1 − + − −
NAK-type protein kinase C6ZRR4 Glyma14g39290.1 − − − +
Nodulin 35 Q9ZWU0 Glyma10g23790.1 − ++ − −
Nodulin-44 P04672 Glyma13g44100.1 − − − +
Pathogenesis-related protein C6SZ24 Glyma17g03340.1 + +++++ + ++++++
PDR-like ABC-transporter Q1M2R7 Glyma03g32520.1 − ++ − −
Peroxisomal ascorbate peroxidase B0M196 Glyma12g03610.1 − +++ + +
Phosphate transporter Q8W198 Glyma19g27380.2 − ++++++ + ++++++
Phosphatidylinositol-specific phospholipase Q43439 Glyma02g42430.1 − + − ++
Phosphoinositide-specific phospholipase C Q43443 Glyma14g06450.1 − + − ++
PIN6a M9WP18 Glyma14g27900.1 − − − +
Plamsma membrane-associated AAA- Q2HZ34 Glyma13g39830.1 + ++ − ++++
Plasma membrane Ca2+-ATPase Q9FVE7 Glyma06g04900.1 − + − −
PR10-like protein C6T1G1 Glyma05g38110.1 − ++ + ++++
PR-5 protein B6ZHC0 Glyma01g42661.1 − ++ + ++
Protein kinase Pti1 C6TCB9 Glyma10g44212.2 − +++ − ++
Protein ROOT HAIR DEFECTIVE 3 I1KGC2 Glyma07g01230.1 − +++++ + ++++++
Pti1 kinase-like protein C6ZRP9 Glyma17g04410.2 − + − −
Pto kinase interactor C6ZRX5 Glyma02g01150.1 − − − +
Putative chalcone isomerase 4 Q53B72 Glyma06g14820.1 − ++++++ + ++++++
Putative receptor-like protein kinase 2 Q49N12 Glyma13g34100.1 − + + +++++
Serine/threonine protein kinase C6ZRR6 Glyma19g40820.1 − + − +
Serine/threonine protein kinase C6ZRT7 Glyma20g38980.2 − + − ++
Serine/threonine protein kinase C6TDV2 Glyma10g01200.1 − − − +
Somatic embryogenesis receptor-like kinase- C6FF61 Glyma08g19270.1 − − − +
Sterol 24-C methyltransferase 2–1 D2D5G3 Glyma04g02271.1 − + − −
Sterol 24-C methyltransferase 2–2 D2D5G4 Glyma06g02330.1 − + − −
Stress-induced protein SAM22 P26987 Glyma07g37240.2 − ++ + ++++
Stress-induced receptor-like kinase 2 B2ZNZ2 Glyma15g02450.1 − − − +
Superoxide dismutase I1JYA9 Glyma04g39930.1 − ++ + ++
Superoxide dismutase I1LCI3 Glyma10g33710.1 − +++++ + ++
Superoxide dismutase [Cu-Zn] I1LKZ3 Glyma11g19840.3 + +++++ − +++++
Superoxide dismutase [Cu-Zn] I1LR93 Glyma12g08650.1 + +++++ − +++++
Superoxide dismutase [Cu-Zn] I1LTN6 Glyma12g30260.1 − ++++ − ++++
Superoxide dismutase [Fe], chloroplastic P28759 Glyma20g33880.2 + +++++ + ++