Table 1.
Summary of the sequencing data and transcriptome assembly of C. reticulata.
| Raw reads | Clean reads | Retain rate (%) | Clean nucleotides (nt) | |
|---|---|---|---|---|
| Leaf buds | 75,791,012 | 57,655,612 | 76.1 | 4,700,656,880 |
| Mature leaves | 95,982,836 | 74,474,740 | 77.6 | 6,113,913,256 |
| Flower buds | 70,418,086 | 57,626,233 | 81.8 | 4,929,278,585 |
| Flowers | 71,987,410 | 59,351,076 | 82.4 | 5,114,541,561 |
| Immature fruits | 80,714,310 | 62,182,007 | 77.0 | 5,323,094,674 |
| Total | 394,893,654 | 311,289,668 | 78.8 | 26,181,484,956 |
| Contigs | Unigenes | |||
| Total number | 232,428 | 141,460 | ||
| Total length (nt) | 186,434,209 | 96,117,212 | ||
| Mean length (nt) | 802 | 679 | ||
| N50 (nt) | 1,255 | 1,080 | ||
| GC content (%) | 42.4 | 41.8 | ||
| Number of length ≥ 500 nt | 119,933 | 57,162 | ||
| Number of length ≥ 1000 nt | 63,845 | 27,880 | ||
| Reads mapping rate (%) | 84.5 | 80.8 |