Table 2.

Summary of functional annotation for C. reticulata unigenes.

Annotation	Number of unigenes	Percentage of matched unigenes (%)	Number of unique homologs
Total unigenes	141,460
Annotated unigenes	69,922	49.4
BLASTx AGAINST PUBLIC PROTEIN DATABASES
NR	68,026	48.1	41,413
TrEMBL	62,618	44.3	37,374
Swiss-Prot	49,469	35.0	16,373
A. thaliana proteins (TAIR10)	56,664	40.1	17,368
V. vinifera proteins	59,968	42.4	15,763
Unigenes matched at least one database	69,922	49.4
Unigenes matched all five databases	42,042	29.7
DOMAIN/GO ANNOTATION
Search against PFAM database	47,693	33.7
Annotated with GO terms	39,301	27.8