Table 1.
Summary of the sequence analyses
| Sample | Raw Reads | Clean Reads | Clean Bases | Error (%) | Q20 (%) | Q30 (%) | GC Content (%) |
|---|---|---|---|---|---|---|---|
| SC_hua_1 | 27216916 | 26238309 | 2.62G | 0.03 | 98.51 | 94.71 | 47.18 |
| SC_hua_2 | 27216916 | 26238309 | 2.62G | 0.04 | 96.71 | 91.53 | 47.24 |
| TL_hua_1 | 26384330 | 25494835 | 2.55G | 0.03 | 98.55 | 94.82 | 46.87 |
| TL_hua_2 | 26384330 | 25494835 | 2.55G | 0.04 | 96.79 | 91.67 | 46.93 |
| Summary | 107202492 | 103466288 | 10.34G |
Sample: Sample name_1, left reads; Sample name_2, right reads. The total number of clean reads is left + right. Clean reads: The number of reads after removing low-quality sequences. The subsequent analysis is based on clean reads. Error rate: Base error rate.Q20 and Q30, the percentage of bases with Phred values >20 and >30, respectively. GC content: the GC ratio of the total base number