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. Author manuscript; available in PMC: 2016 Feb 24.
Published in final edited form as: J Phys Chem A. 2009 Mar 12;113(10):2176–2182. doi: 10.1021/jp810548d

Table 2.

Key substrate-protein averaged distances (in Å) obtained at the reactants state, transition state, and products state of the hydride transfer step of the TS catalyzed reaction, computed at AM1/MM level, at the four different temperatures; 278, 293, 303 and 313 K. Primed residues indicate they are from subunit B of this homodimeric protein.

Reactants state T / K

278 293 303 313

CYS146 S WAT 40 H2 1.93 ± 0.12 1.94 ± 0.13 1.94 ± 0.13 1.94 ± 0.13
CYS146 S ARG 166 HH11 2.4 ± 0.3 2.5 ± 0.3 2.5 ± 0.3 2.6 ± 0.3
UMP O2 ASP 169 H 2.00 ± 0.11 2.10 ± 0.15 2.03 ± 0.11 1.98 ± 0.11
UMP P ARG 166 HH22 2.32 ± 0.10 2.33 ± 0.09 2.31 ± 0.09 2.35 ± 0.10
UMP O1P ARG' 126 HH12 2.08 ± 0.20 2.17 ± 0.20 2.25 ± 0.19 2.10 ± 0.22
UMP O1P ARG 21 HE 1.59 ± 0.09 1.61 ± 0.10 1.62 ± 0.10 1.68 ± 0.13
UMP O2P ARG' 126 HE 1.72 ± 0.12 1.69 ± 0.12 1.70 ± 0.12 1.69 ± 0.12
UMP O2P ARG 166 HH22 1.63 ± 0.11 1.63 ± 0.12 1.63 ± 0.13 1.62 ± 0.12
UMP O3P ARG 166 HH12 1.75 ± 0.15 1.77 ± 0.17 1.78 ± 0.16 1.77 ± 0.19
UMP O3P ARG 166 HH22 2.37 ± 0.18 2.37 ± 0.18 2.35 ± 0.19 2.42 ± 0.19
UMP O3P ARG' 127 HH11 1.67 ± 0.11 1.64 ± 0.12 1.66 ± 0.12 1.67 ± 0.13

transition state T / K

278 293 303 313

CYS146 S WAT 40 H2 1.93 ± 0.12 1.92 ± 0.12 1.91 ± 0.12 1.92 ± 0.13
CYS146 S ARG 166 HH11 2.4 ± 0.3 2.4 ± 0.3 2.3 ± 0.3 2.4 ± 0.3
UMP O2 ASP 169 H 1.97 ± 0.11 2.02 ± 0.12 2.03 ± 0.12 2.07 ± 0.13
UMP P ARG 166 HH22 2.30 ± 0.09 2.29 ± 0.09 2.29 ± 0.10 2.29 ± 0.10
UMP O1P ARG' 126 HH12 2.14 ± 0.20 2.22 ± 0.19 2.17 ± 0.20 2.18 ± 0.18
UMP O1P ARG 21 HE 1.58 ± 0.09 1.62 ± 0.10 1.66 ± 0.12 1.69 ± 0.13
UMP O2P ARG' 126 HE 1.70 ± 0.11 1.68 ± 0.11 1.69 ± 0.12 1.69 ± 0.12
UMP O2P ARG 166 HH22 1.62 ± 0.11 1.66 ± 0.13 1.68 ± 0.14 1.65 ± 0.13
UMP O3P ARG 166 HH12 1.79 ± 0.17 1.90 ± 0.22 1.9 ± 0.3 1.88 ± 0.22
UMP O3P ARG 166 HH22 2.36 ± 0.17 2.28 ± 0.19 2.25 ± 0.20 2.29 ± 0.19
UMP O3P ARG' 127 HH11 1.69 ± 0.12 1.64 ± 0.11 1.64 ± 0.11 1.73 ± 0.15

Products state T / K

278 293 303 313

CYS146 S WAT 40 H2 1.76 ± 0.09 1.76 ± 0.09 1.77 ± 0.09 1.77 ± 0.09
CYS146 S ARG 166 HH11 1.71 ± 0.08 1.71 ± 0.09 1.71 ± 0.09 1.71 ± 0.09
UMP O2 ASP 169 H 2.00 ± 0.13 2.06 ± 0.16 2.05 ± 0.15 2.01 ± 0.14
UMP P ARG 166 HH22 2.33 ± 0.10 2.32 ± 0.10 2.33 ± 0.10 2.32 ± 0.10
UMP O1P ARG' 126 HH12 2.26 ± 0.21 2.33 ± 0.19 2.28 ± 0.19 2.04 ± 0.20
UMP O1P ARG 21 HE 1.58 ± 0.09 1.61 ± 0.10 1.61 ± 0.10 1.63 ± 0.12
UMP O2P ARG' 126 HE 1.67 ± 0.11 1.65 ± 0.11 1.65 ± 0.11 1.66 ± 0.12
UMP O2P ARG 166 HH22 1.62 ± 0.11 1.68 ± 0.13 1.68 ± 0.14 1.68 ± 0.13
UMP O3P ARG 166 HH12 2.00 ± 0.18 2.01 ± 0.20 2.02 ± 0.24 2.12 ± 0.23
UMP O3P ARG 166 HH22 2.37 ± 0.18 2.29 ± 0.19 2.31 ± 0.21 2.29 ± 0.21
UMP O3P ARG' 127 HH11 1.66 ± 0.11 1.66 ± 0.11 1.62 ± 0.11 1.62 ± 0.11