Table 1. Intersubtype breakpoint locations in HIV-1 BG recombinant viruses analyzed in this study, including all available CRF14_BG viruses sequenced in near full-length genomes, as determined with jpHMM.
| Sample ID | Genes and positions in HXB2 genome of breakpoint locations | |||||
|---|---|---|---|---|---|---|
| Integrase | Integrase | Vif | Vif | gp120 | gp41 | |
| 9196_01 | 4580±20 | 4847±16 | 5341±25 | 5515±22 | 6215±25 | 8271±44 |
| X3208 | 4557±14 | 4847±16 | 5341±24 | 5503±10 | 6228±38 | 8296±34 |
| X3121 | 4562±27 | 4847±16 | n.a. | n.a. | n.a. | n.a. |
| 753_G_0_Rennes | 4560±25 | 4847±16 | n.a. | n.a. | n.a. | n.a. |
| VLGC | 6251±26 | 8289±27 | ||||
| CRF14_BG | ||||||
| X397 | 6340±19 | 8289±27 | ||||
| X421 | 6340±19 | 8289±27 | ||||
| X475 | 6340±19 | 8289±27 | ||||
| X477 | 6340±19 | 8289±30 | ||||
| X605 | 6340±19 | 8290±28 | ||||
| X623 | 6341±18 | 8279±17 | ||||
| X1118-4 | 6339±18 | 8279±17 | ||||
| X1589-2 | 6333±26 | 8290±28 | ||||
| X1870 | 6339±17 | 8328±41 | ||||
| 00PTHDE10 | 6341±18 | 8289±27 | ||||
n.a.: sequence not available in the corresponding segment.