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. 2016 Feb 22;11(2):e0149608. doi: 10.1371/journal.pone.0149608

Table 1. Deduced amino acid sequences of the CVVI-49/2010 and CVVI-50/2014 strains relative to genetically related strains.

Strains HA NS M1 PB2
Cleavage site Glycosylation site Receptor binding site Amino acids position C-terminal Amino acid position
323–332 140–142 154–156 222 224 80–84 42 92 149 30 215 627 701
A/quail/Vietnam/CVVI-49/2010 REGRRKKR/G KSS NST Q G Deletion S D A ESEV D A E D
A/quail/Vietnam/CVVI-50/2014 RERRRK—R/G NSS DNA Q G Deletion S E A ESEV D A E D
A/goose/Guangdong/1/1996 RERRRKKR/G RSS NSA Q G No deletion A D A ESEV D A E D
A/Dk/HK/821/02 IERRRKKR/G KSS NSA Q G Deletion S D A ESEV D A E D
A/quail/Vietnam/36/2004 RERRRKKR/G KSS NST Q G Deletion S D A ESEV D A E D
A/quail/Vietnam/177/2004 RERRRKKR/G KSS NST Q G Deletion S D A ESEV D A E D
A/quail/Vietnam/TG-007B/2004 RERRRKKR/G KSS NST Q G Deletion S D A EPEV D A E D
A/quail/Vietnam/15/2005 RERRRK—R/G KSS NDA Q G Deletion S D A ESEV D A E D
A/quail/Vietnam/282/2005 RERRRKKR/G KSS NST Q G Deletion S D A ESEV D A E D
A/Cambodia/R0405050/2007 REGRRKKR/G KSS NNS Q G Deletion S D A ESEV D A E D
A/Cambodia/S1211394/2008 REGRRKKR/G KSS NST Q G Deletion S D A ESEV D A E D
A/Hubei/1/2010 RERRRK—R/G KSS DNA Q G Deletion S D A ESEV D A E D
A/Hong Kong/6841/2010 RERRRK—R/G NSS DNA Q G Deletion S D A ESEV D A E D
A/barn swallow/HongKong/1161/2010 IERRRKKR/G NSS DNA Q G Deletion S E A ESEV D A E D

*HA-Haemagglutinin, NS-Non-structural proteins, M1-Matrix protein M1, and PB2-Polymerase PB2. A-Alanine, D-Aspartic acid, E-Glutamic acid, G-Glycine, I-Isoleucine, K-Lysine, N-Asparagine, Q-Glutamine, R-Arginine, S-Serine, T-Threonine, V-Valine.