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The performance of cmsearch on the synthetic community data
| CM Training set | Training set size (# archaeal and bacterial genes) | # output reads | Sensitivity | PPV | Running time (the sum of archaeal and bacterial CMs) |
|---|---|---|---|---|---|
| RDP training set, excluding the 64 genes | 2 384 | 66 755 | 0.982 | 0.962 | 11:56:52 |
| RDP training set, excluding the 50 genera | 2 325 | 66 347 | 0.976 | 0.958 | 12:21:32 |
