Table 1. Summary of statistics calculated, putative function and expression levels for genes of unknown function with no nucleotide level matches outside of the STIB900 Tbr genome.
A) Statistics reported include length in nucleotides, Gravy Index (GI), Instability index (II), Isoelectric Point (IP), number of coiled coils (CC), longest disorder region in amino acids (DR), Percentage of coil structure (CS), number of trans-membrane helices (TH), number of signal peptides (SP), Insertion score (IS), number of homologs in the NCBI non-redundant protein database (HNr), number of homologs in the RCSB protein database (HPDB). B) Putative function is listed, as determined using a meta-prediction search and the method used to determine putative function.
| A | B | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ORF | Length | GI | II | IE | CC | DR | CS | TH | SP | IS | HNr | HPDB | Putative function | Source |
| 1 | 1749 | -0.5 | 53 | 9 | 0 | 11 | 26 | No | No | 0 | 1012 | 40 | pentatricopeptide repeat-containing protein | Hhsearch |
| 2 | 1749 | -0.5 | 53 | 9 | 0 | 11 | 26 | No | No | 0 | 1012 | 40 | pentatricopeptide repeat-containing protein | HHsearch |
| 3 | 1038 | 0.3 | 54 | 6 | 0 | 25 | 30 | 1 | 39 | - | 2 | 0 | Alcohol Oxidoreductase | EzyPred |
| 4 | 1452 | -0.3 | 58 | 6 | 0 | 73 | 45 | No | No | - | 2 | 0 | Hydrolase acting on ester bonds | EzyPred |
| 5 | 2799 | -0.3 | 53 | 8 | 0 | 35 | 51 | No | No | 0 | 15 | 0 | Hydrolase acting on ester bonds | EzyPred |
| 6 | 1251 | 0.2 | 28 | 8 | 0 | 54 | 35 | 10 | No | 0 | 810 | 0 | Solute carrier family 35 | Homolog in SWISS-PROT Database |
| 7 | 1530 | -0.6 | 61 | 6 | 21 | 115 | 47 | No | No | - | 1 | 0 | None detected |