Table 3.
SNPs most significantly associated with dichotomized frequency of fibro-osseous lesions and logarithmic frequency of fibro-osseous lesions. The closest gene to the SNP is identified including distance to the gene if intergenic. P-values are for dichotomized frequency (dFreq) and logarithmic frequency (logFreq).
| SNP ID | Chr | Position | Gene | Gene name | SNP relation to gene | Distance from gene | P-value (dFreq) | P-value (logFreq) |
|---|---|---|---|---|---|---|---|---|
| rs33108071 | 8 | 90751852 | Papd5 | PAP Associated Domain Containing 5 | Intronic | 5.01426e-10 | 1.39198e-07 | |
| rs32087871 | 15 | 23621293 | Cdh18 | Cadherin 18 | Intergenic | 217 kb | 7.24642e-07 | 5.42675e-05 |
| rs33500669 | 8 | 90618689 | Tmem188 | CTD nuclear envelope phosphatase 1 regulatory subunit 1 | Intergenic | 23.7 kb | 1.33160e-06 | 3.54036e-05 |
| rs45770368 | 15 | 23885266 | Cdh18 | Cadherin 18 | Intergenic | 2.71569e-06 | ||
| rs31004232 | 19 | 3319089 | Cpt1A | Carnitine palmitoyltransferase 1A | Intergenic | 4.2 kb | 2.75266e-06 | 7.76579e-06 |
| rs30524929 | 19 | 3344381 | Cpt1A | Carnitine palmitoyltransferase 1A | Intronic | 2.75266e-06 | 7.76579e-06 | |
| rs30448815 | 19 | 3366276 | Cpt1A | Carnitine palmitoyltransferase 1A | Intronic | 2.75266e-06 | 7.76579e-06 | |
| rs31534292 | 18 | 27559918 | Gm7729 | Heterogeneous nuclear ribonucleoprotein A1 pseudogene | Intergenic | 197.2 kb | 4.54441e-06 | 8.21717e-06 |
| rs31536363 | 18 | 27581952 | Gm7729 | Heterogeneous nuclear ribonucleoprotein A1 pseudogene | Intergenic | 175.1 kb | 4.54441e-06 | 8.21717e-06 |
| rs30524680 | 01 | 72409588 | Xrcc5 | X-ray repair complementing defective repair in Chinese Hamster Cells 5 | Intronic | 8.86502e-06 | 3.18017e-05 | |
| rs29893269 | 03 | 34176862 | Dnajc19 | DnaJ (Hsp40) Homolog, subfamily C, member 19 | Intergenic | 196.6 kb | 9.92306e-06 |