Table 1. Primers and probes used for Neisseria meningitidis serogrouping of isolates from samples from a national register for molecular surveillance of invasive bacterial disease, Italy, 2007–2014.
Target |
Gene |
Forward primer |
Reverse primer |
Probe |
---|---|---|---|---|
N. meningitidis | ctrA | gctgcggtaggtggttcaa | ttgtcgcggatttgcaacta | FAM_cattgccacgtgtcagctgcacat_TAMRA |
Serogroup A | sacB | cccccagcatggctagattt | agggcactttgtggcataattt | FAM_accctaaaattcaatgggtatatcacga_TAMRA |
Serogroup B | siaD B | ttggacttggttaagctgacctaa | gttgacaacatctccattttatcttacc | FAM_ttagatatgacaaataaattgttacgtggg_TAMRA |
Serogroup C | siaD C | agggaaccgcaacctatgc | cacaaaacgttgctcaaattttg | FAM_ccactcttagaatcatttacatacaaaccc_TAMRA |
Serogroup W/Y | siaD W/Y | gctgataaattgttcttatggtctgaa | cggcaccagaaccaatctct | FAM_ttggaatcatgagcttttaccaaatccaaca_TAMRA |
Serogroup W* | siaD | cagaagtgagggatttccata | cacaaccattttcattatagttactgt | |
Serogroup Y* | siaD | ctcaaagcgaaggctttggtta | ctgaagcgttttcattataattgctaa | |
*Identified by using endpoint PCR.