Table 2.
KEGG enrichment for acetylated proteinsa in glutamate‐producing and nonproducing conditions
| Termb | KEGG pathway | Countc | %d | Detected proteome backgrounde | Entire proteome backgroundf | |||
|---|---|---|---|---|---|---|---|---|
| P‐value | Fold enrichment | P‐value | Fold enrichment | Bonferroni | ||||
| In nonproducing condition (325 DAVID IDs in the 1396 detected proteome) | ||||||||
| cgl00020 | Citrate cycle (TCA cycle) | 15 | 4.6 | 4.98E‐06 | 2.9 | 2.59E‐12 | 9.3 | 4.02E‐10 |
| cgl00970 | Aminoacyl‐tRNA biosynthesis | 15 | 4.6 | 0.00 579 | 1.9 | 1.03E‐09 | 7.0 | 1.59E‐07 |
| cgl03010 | Ribosome | 26 | 8.0 | 0.00 582 | 1.6 | 1.98E‐10 | 4.2 | 3.07E‐08 |
| In glutamate‐producing condition (213 DAVID IDs in the 1181 detected proteome) | ||||||||
| cgl03010 | Ribosome | 24 | 12.1 | 0.00 101 | 1.8 | 1.18E‐11 | 5.2 | 1.48E‐09 |
| cgl00020 | Citrate cycle (TCA cycle) | 11 | 4.7 | 0.00 191 | 2.6 | 2.84E‐08 | 9.3 | 3.58E‐06 |
| cgl00970 | Aminoacyl‐tRNA biosynthesis | 13 | 6.1 | 0.00 541 | 2.2 | 5.11E‐09 | 8.2 | 6.44E‐07 |
| 209 proteins that contain reproducible and more than 2‐fold changed acetylation sites | ||||||||
| cgl00020 | Citrate cycle (TCA cycle) | 11 | 5.3 | 1.09E‐04 | 3.6 | 3.65E‐09 | 11.4 | 4.63E‐07 |
a
Proteins that contain reproducible acetylation sites were used.
b
Kyoto Encyclopedia of Genes and Genome pathway (KEGG) pathway term.
c
Number of genes matching a given KEGG pathway term.
d
Percentage of genes matching a given term divided by the total number of input genes.
e
The detected proteome in each condition was used as background (P‐value < 0.01).
f
The entire proteome of Corynebacterium glutamicum was used as background. The Database for Annotation, Visualization, and Integrated Discovery.DAVID