Table 7.
The component genes of the apoptosis GO term shared by the RNA-seq and the microarray datasets
| Gene | Discovery (RNA-seq) dataset | Supportive (microarray) dataset | Categorization according to DAVID | |||||
|---|---|---|---|---|---|---|---|---|
|
| ||||||||
| Ensembl ID | PPEE | PPDE | PostFC | Probe set ID | P value | FC | ||
| HIPK3 | ENST00000456517 | 0 | 1 | 183.15 | 210148_at | 1.90E-03 | 2.32 | Anti-apoptosis |
| TRIO | ENST00000512070 | 0 | 1 | 60.94 | 209010_s_at | 9.04E-03 | 1.48 | Apoptosis induction |
| TRIO | ENST00000537187 | 0 | 1 | 119.87 | 209010_s_at | 9.04E-03 | 1.48 | Apoptosis induction |
| TRIO | ENST00000512070 | 0 | 1 | 60.94 | 244527_at | 3.25E-02 | 1.48 | Apoptosis induction |
| TRIO | ENST00000537187 | 0 | 1 | 119.87 | 244527_at | 3.25E-02 | 1.48 | Apoptosis induction |
| ARHGEF2 | ENST00000313667 | 0 | 1 | 205.24 | 207629_s_at | 1.17E-02 | 1.77 | Apoptosis induction |
| BCL6 | ENST00000232014 | 0 | 1 | 49.61 | 228758_at | 1.26E-02 | 3.16 | Apoptosis induction/anti-apoptosis |
| TLR4 | ENST00000394487 | 0 | 1 | 20.66 | 221060_s_at | 1.50E-02 | 2.87 | Apoptosis induction |
| TLR4 | ENST00000394487 | 0 | 1 | 20.66 | 232068_s_at | 3.88E-02 | 8.60 | Apoptosis induction |
| TLR4 | ENST00000394487 | 0 | 1 | 20.66 | 224341_x_at | 4.06E-02 | 12.61 | Apoptosis induction |
| STK17B | ENST00000409228 | 0 | 1 | 167.60 | 243797_at | 1.87E-02 | 3.34 | Apoptosis induction |
| ACTN4 | ENST00000390009 | 0 | 1 | 11.75 | 200601_at | 1.87E-02 | 1.76 | N/A |
| ACTN4 | ENST00000495553 | 0 | 1 | 22.24 | 200601_at | 1.87E-02 | 1.76 | N/A |
| ACTN4 | ENST00000588618 | 0 | 1 | 111.48 | 200601_at | 1.87E-02 | 1.76 | N/A |
| ACTN4 | ENST00000424234 | 0 | 1 | 197.24 | 200601_at | 1.87E-02 | 1.76 | N/A |
| NLRP3 | ENST00000336119 | 0 | 1 | 4.53 | 216015_s_at | 2.16E-02 | 2.44 | Apoptosis induction |
| NLRP3 | ENST00000391827 | 0 | 1 | 116.22 | 216015_s_at | 2.16E-02 | 2.44 | Apoptosis induction |
| NLRP3 | ENST00000336119 | 0 | 1 | 4.53 | 207075_at | 4.35E-02 | 4.97 | Apoptosis induction |
| NLRP3 | ENST00000391827 | 0 | 1 | 116.22 | 207075_at | 4.35E-02 | 4.97 | Apoptosis induction |
| BCL2L13 | ENST00000317582 | 0 | 1 | 11.41 | 223664_x_at | 2.42E-02 | 1.40 | Apoptosis induction |
| NLRP12 | ENST00000391775 | 0 | 1 | 169.64 | 1554952_s_at | 2.73E-02 | 3.89 | N/A |
| NLRP12 | ENST00000391775 | 0 | 1 | 169.64 | 223944_at | 3.77E-02 | 4.32 | N/A |
| IKBKG | ENST00000263518 | 0 | 1 | 1.07 | 209929_s_at | 2.86E-02 | 1.57 | Apoptosis induction |
| BNIP3L | ENST00000523515 | 0 | 1 | 114.90 | 221479_s_at | 2.95E-02 | 2.45 | Apoptosis induction/anti-apoptosis |
| PEA15 | ENST00000488858 | 0 | 1 | 87.49 | 200788_s_at | 3.06E-02 | 3.54 | Anti-apoptosis |
| APP | ENST00000439274 | 0 | 1 | 268.66 | 214953_s_at | 3.24E-02 | 2.43 | Apoptosis induction |
| XIAP | ENST00000371199 | 0 | 1 | 1.37 | 243026_x_at | 3.55E-02 | 1.72 | Anti-apoptosis |
| NLRC4 | ENST00000360906 | 0 | 1 | 16.54 | 1552553_a_at | 3.69E-02 | 8.24 | Apoptosis induction |
| NUP62 | ENST00000597723 | 0 | 1 | 73.06 | 207740_s_at | 3.72E-02 | 1.73 | Anti-apoptosis |
| NUP62 | ENST00000597029 | 0 | 1 | 101.74 | 207740_s_at | 3.72E-02 | 1.73 | Anti-apoptosis |
| THBS1 | ENST00000560894 | 0 | 1 | 4.23 | 201108_s_at | 4.02E-02 | 4.29 | Anti-apoptosis |
| THBS1 | ENST00000559746 | 0 | 1 | 24.85 | 201108_s_at | 4.02E-02 | 4.29 | Anti-apoptosis |
| RXRA | ENST00000481739 | 0 | 1 | 12.21 | 202449_s_at | 4.19E-02 | 3.99 | Apoptosis induction |
| CIDEB | ENST00000258807 | 0 | 1 | 1.42 | 221188_s_at | 4.20E-02 | 1.88 | Apoptosis induction |
| NCSTN | ENST00000535857 | 0 | 1 | 65.56 | 208759_at | 4.59E-02 | 2.05 | Apoptosis induction |
| BID | ENST00000399765 | 0 | 1 | 2.28 | 211725_s_at | 4.63E-02 | 2.44 | Apoptosis induction |
| MYD88 | ENST00000463956 | 0 | 1 | 124.08 | 209124_at | 4.91E-02 | 2.55 | Anti-apoptosis |