Skip to main content
. 2016 Feb 26;7:190. doi: 10.3389/fpls.2016.00190

Table 1.

List of proteins differentially regulated by Cd and Cd+SNAP in the plasma membrane as determined by using iTRAQ analysis.

Accession numbera Protein names Cd (12 h): Controlb Cd (1 day): Controlc Cd+SNAP (12 h): Controld Cd+SNAP (1 day): Controle
Rep 1 p-value Average
Rep 2 p-value
Rep 3 p-value
Rep 1 p-value Average
Rep 2 p-value
Rep 3 p-value
Rep 1 p-value Average
Rep 2 p-value
Rep 3 p-value
Rep 1 p-value Average
Rep 2 p-value
Rep 3 p-value
ATPases
gi|218179 H-ATPase 1.664
1.586
1.624
0.037
0.023
0.034
1.625 1.769
1.770
1.742
0.013
0.005
0.006
1.760 1.926
1.800
1.871
0.038
0.035
0.037
1.866 1.932
1.961
1.926
0.004
0.005
0.009
1.940
gi|20302439 Plasma membrane H+-ATPase 1.292
1.269
1.397
0.017
0.009
0.008
1.319 1.384
1.541
1.440
0.021
0.032
0.023
1.455 1.493
1.477
1.420
0.033
0.003
0.021
1.463 1.689
1.699
1.667
0.046
0.005
0.008
1.685
gi|31432331 AAA family ATPase 0.811
0.843
0.838
0.041
0.012
0.032
0.531 0.971
0.887
0.859
0.003
0.036
0.008
0.706 0.986
0.940
0.994
0.034
0.009
0.012
1.273 1.510
1.457
1.684
0.003
0.004
0.008
1.550
gi|50252047 Putative calcium-transporting ATPase 0.850
0.785
0.794
0.006
0.009
0.008
0.510 0.956
0.805
0.883
0.016
0.009
0.021
0.881 0.850
0.983
0.955
0.029
0.028
0.001
0.929 1.611
1.633
1.603
0.042
0.035
0.021
1.616
gi|20302437 Plasma membrane H-ATPase 0.945
0.854
0.842
0.034
0.021
0.024
0.880 1.194
1.282
1.268
0.004
0.002
0.031
1.248 1.265
1.268
1.319
0.021
0.021
0.018
1.384 1.552
1.720
1.682
0.021
0.035
0.021
1.651
gi|544586339 Type IIB Ca2+ATPase 1.589
1.483
1.616
0.035
0.031
0.025
1.563 1.661
1.637
1.641
0.021
0.015
0.018
1.646 1.561
1.424
1.487
0.021
0.005
0.017
1.791 1.651
1.652
1.519
0.012
0.035
0.007
1.607
gi|77552962 Calcium-transporting ATPase 4 1.451
1.421
1.450
0.011
0.016
0.015
1.441 1.702
1.870
1.689
0.010
0.010
0.016
1.754 1.515
1.527
1.575
0.034
0.007
0.007
1.539 1.750
1.715
1.709
0.030
0.058
0.024
1.725
gi|31432100 Calcium-transporting ATPase 13 1.318
1.337
1.371
0.016
0.011
1.342 1.530
1.555
1.592
0.042
0.021
1.559 1.685
1.624
1.677
0.029
0.024
1.662 1.887
1.866
1.855
0.016
0.005
1.869
gi|122248711 ATP-citrate synthase alpha chain protein 2 0.554
0.552
0.637
0.030
0.022
0.025
0.581 0.445
0.453
0.442
0.021
0.027
0.021
0.447 0.554
0.552
0.005
0.020
0.023
0.369 0.554
0.552
0.006
0.025
0.011
0.369
TRANSPORTERS
gi|23600439 Putative phosphate transporter OsPT1 0.777
0.592
0.624
0.017
0.020
0.021
0.664 0.573
0.498
0.480
0.043
0.035
0.017
0.517 0.854
0.687
0.583
0.027
0.028
0.025
0.708 0.829
0.736
0.835
0.009
0.005
0.007
0.800
gi|52550769 Phosphate transporter 7 0.762
0.778
0.744
0.011
0.020
0.007
0.861 0.798
0.759
0.771
0.048
0.021
0.035
0.576 0.678
0.646
0.648
0.036
0.036
0.032
0.657 0.474
0.509
0.482
0.010
0.021
0.009
0.488
gi|52550767 Phosphate transporter 5 0.514
0.492
0.454
0.003
0.028
0.025
0.487 0.434
0.442
0.345
0.017
0.021
0.021
0.407 0.505
0.511
0.499
0.006
0.007
0.008
0.505 0.480
0.489
0.545
0.038
0.035
0.032
0.505
gi|20279475 Putative ABC transporter 1.093
1.144
0.993
0.039
0.036
0.032
1.077 1.569
1.696
1.705
0.019
0.021
0.022
1.657 1.467
1.424
1.412
0.026
0.028
0.025
1.434 1.765
1.756
1.771
0.022
0.035
0.035
1.764
gi|37548736 Sucrose transporter SUT2 1.356
1.471
1.467
0.044
0.022
0.023
1.431 1.519
1.450
1.589
0.035
0.025
0.032
1.519 1.517
1.563
1.465
0.013
0.023
0.032
1.515 1.566
1.647
1.669
0.029
0.007
0.012
1.627
gi|49388481 PDR-like ABC transporter 0.439
0.461
0.433
0.030
0.014
0.010
0.444 0.669
0.543
0.460
0.023
0.016
0.023
0.557 0.660
0.622
0.757
0.021
0.011
0.007
0.680 0.724
0.699
0.790
0.001
0.002
0.010
0.738
gi|56785080 Putative oligopeptide transporter 0.841
0.843
0.866
0.021
0.028
0.024
0.850 0.642
0.771
0.753
0.025
0.025
0.010
0.722 0.495
0.482
0.513
0.028
0.002
0.010
0.497 0.400
0.503
0.446
0.006
0.013
0.011
0.450
gi|44953685 Iron transport protein 2 0.557
0.638
0.664
0.019
0.004
0.024
0.620 0.343
0.410
0.370
0.016
0.000
0.011
0.374 0.493
0.576
0.526
0.020
0.024
0.019
0.532 0.424
0.449
0.406
0.025
0.029
0.010
0.426
gi|108711111 Oligopeptide transporter 3 0.659
0.612
0.764
0.020
0.014
0.023
0.678 0.556
0.549
0.680
0.013
0.007
0.023
0.595 0.569
0.527
0.531
0.014
0.006
0.013
0.542 0.417
0.388
0.460
0.007
0.015
0.029
0.422
gi|3377509 Auxin transport protein REH1 0.413
0.499
0.371
0.006
0.013
0.009
0.428 0.627
0.624
0.721
0.009
0.002
0.014
0.657 0.449
0.468
0.496
0.026
0.012
0.027
0.471 0.352
0.462
0.333
0.023
0.003
0.001
0.382
gi|11991114 Monosaccharide transporter 3 1.494
1.584
1.445
0.012
0.017
0.021
1.508 1.563
1.660
1.666
0.009
0.002
0.027
1.630 1.534
1.524
1.545
0.009
0.000
0.027
1.534 1.764
1.711
1.771
0.016
0.018
0.016
1.749
gi|77549482 Nitrate transporter NTL1 1.143
1.220
1.342
0.007
0.023
0.018
1.235 1.454
1.656
1.564
0.026
0.013
0.016
1.558 1.443
1.420
1.454
0.029
0.019
0.017
1.439 1.643
1.620
1.656
0.007
0.033
0.005
1.640
gi|41052760 High affinity nitrate transporter 1.154
1.334
1.343
0.030
0.002
0.001
1.277 1.454
1.446
1.468
0.013
0.018
0.010
1.456 1.529
1.562
1,656
0.025
0.008
0.003
1.582 1.729
1.762
1.689
0.029
0.032
0.013
1.727
gi|6409176 Nitrate transporter 1.238
1.345
1.317
0.012
0.015
0.017
1.300 1.545
1.756
1.770
0.012
0.000
0.003
1.690 1.638
1.625
1.656
0.020
0.008
0.011
1.640 1.838
1.825
1.893
0.001
0.011
0.014
1.852
gi|41052964 Putative nitrate transporter NRT1 1.418
1.420
1.3032
0.011
0.015
0.027
1.380 1.623
1.725
1.740
0.032
0.028
0.014
1.696 1.585
1.520
1.567
0.002
0.033
0.024
1.557 1.785
1.720
1.756
0.014
0.021
0.029
1.754
gi|8547358 Phosphate transporter 0.649
0.626
0.643
0.030
0.021
0.029
0.639 0.798
0.759
0.771
0.048
0.021
0.035
0.776 0.549
0.526
0.534
0.030
0.019
0.006
0.536 0.454
0.504
0.454
0.006
0.011
0.025
0.471
KINASES
gi|122247193 Benzothiadiazole-induced MAP kinase 1 1.319
1.214
1.324
0.031
0.021
0.020
1.286 1.565
1.634
1.650
0.014
0.023
0.022
1.616 1.519
1.514
1.565
0.018
0.005
0.025
1.533 1.619
1.614
1.656
0.007
0.006
0.020
1.630
gi|82654925 Calcium-dependent protein kinase isoform 11 0.554
0.552
0.554
0.018
0.010
0.003
0.318 0.454
0.452
0.483
0.029
0.024
0.009
0.463 0.654
0.652
0.656
0.029
0.015
0.009
0.654 0.676
0.656
0.670
0.018
0.006
0.019
0.518
gi|75148536 Probable calcium-binding protein CML7 1.319
1.214
1.342
0.010
0.015
0.004
1.292 1.445
1.434
1.446
0.012
0.010
0.029
1.442 1.519
1.514
1.545
0.003
0.021
0.009
1.526 1.619
1.614
1.703
0.012
0.013
0.017
1.645
gi|28564579 Putative receptor-like protein kinase 1.294
1.282
1.274
0.028
0.018
0.010
1.283 1.489
1.4998
1.4923
0.021
0.006
0.014
1.494 1.394
1.382
1.3656
0.015
0.021
1.381 1.594
1.526
1.567
0.015
0.009
0.031
1.562
gi|37534762 Putative serine/threonine-specific kinase like protein 0.547
0.547
0.524
0.005
0.029
0.002
0.539 0.667
0.637
0.635
0.018
0.021
0.020
0.646 0.547
0.547
0.523
0 013
0.023
0.031
0.539 0.434
0.443
0.452
0.028
0.023
0.031
0.443
gi|50725798 Putative protein serine/threonine kinase 0.757
0.768
0.756
0.013
0.024
0.003
0.560 0.747
0.748
0.893
0.026
0.007
0.029
0.796 0.847
0.848
0.867
0.022
0.012
0.005
0.654 0.412
0.484
0.448
0.005
0.016
0.020
0.448
gi|50938053 putative serine/threonine- specific protein 1.776
1.784
1.756
0.026
0.023
0.018
1.772 1.476
1.484
1.445
0.016
0.012
0.006
1.468 1.876
1.884
1.867
0.010
0.032
0.027
1.876 1.656
1.667
1.698
0.027
0.021
0.024
1.674
gi|34898856 Serine/threonine kinase receptor precursor-like 0.881
0.858
0.845
0.016
0.026
0.007
0.861 0.881
0.858
0.783
0.033
0.010
0.014
0.441 0.981
0.958
0.956
0.026
0.027
0.024
0.965 0.454
0.475
0.463
0.007
0.032
0.003
0.464
gi|38679443 Benzothiadiazole- induced somatic embryogenesis receptor kinase 1.234
1.256
1.223
0.003
0.010
0.022
1.238 1.454
1.434
1.440
0.033
0.010
0.014
1.443 1.434
1.456
1.461
0.023
0.018
0.007
1.450 1.634
1.656
1.715
0.016
0.009
0.016
1.668
PHOSPHATASES AND PHOSLIPASES
gi|51090926 Phospholipase D 0.554
0.552
0.673
0.020
0.004
0.002
1.693 0.434
0.445
0.453
0.007
0.016
0.019
1.244 0.554
0.552
0.018
0.007
0.012
1.869 0.554
0.552
0.001
0.020
0.031
1.369
gi|34898886 Putative protein phosphatase 2C 0.554
0.552
0.454
0.016
0.018
0.022
1.220 0.654
0.652
0.656
0.021
0.030
0.032
1.654 0.554
0.552
0.545
0.014
0.027
0.013
1.550 0.454
0.445
0.436
0.031
0.024
0.035
1.645
gi|12698878 Phosphoinositide-specific phospholipase C 1.519
1.414
1.423
0.020
0.013
0.024
1.452 1.761
1.772
1.732
0.008
0.032
0.026
1.755 1.619
1.614
1.756
0.012
0.017
0.003
1.663 1.819
1.814
1.856
0.032
0.023
0.027
1.830
gi|223635541 Probable protein phosphatase 2C 1.519
1.214
1.323
0.014
0.010
0.014
1.352 1.656
1.656
1.670
0.032
0.005
0.021
1.661 1.519
1.514
1.546
0.025
0.024
0.005
1.526 1.619
1.614
1.676
0.005
0.009
0.021
1.636
gi|42408807 Putative phosphoprotein phosphatase PP7 0.554
0.552
0.565
0.023
0.020
0.022
0.857 0.554
0.552
0.487
0.008
0.024
0.007
0.631 0.554
0.552
0.576
0.011
0.017
0.027
0.461 0.444
0.443
0.434
0.028
0.017
0.016
0.340
METABOLISM ENZYMES
gi|20374 Sucrose synthase 0.554
0.552
0.565
0.026
0.014
0.006
0.557 0.554
0.552
0.465
0.026
0.032
0.008
0.524 0.654
0.652
0.656
0.005
0.032
0.009
0.654 0.435
0.446
0.412
0.006
0.020
0.024
0.431
gi|22748323 Putative beta-1,3-glucanase 1.519
1.414
1.421
0.022
0.010
0.009
1.451 1.719
1.614
1.756
0.017
0.012
0.025
1.696 1.519
1.614
1.565
0.001
0.013
0.025
1.566 1.675
1.675
1.657
0.024
0.010
0.018
1.669
gi|34902210 Putative callose synthase 0.554
0.552
0.453
0.007
0.029
0.022
0.320 0.454
0.447
0.476
0.027
0.002
0.022
0.459 0.554
0.552
0.645
0.012
0.031
0.028
0.584 0.754
0.752
0.786
0.005
0.005
0.017
0.764
gi|50934423 Putative 3-glucanase 1.319
1.314
1.332
0.012
0.011
0.023
1.322 1.633
1.564
1.660
0.019
0.014
0.015
1.619 1.519
1.514
1.656
0.013
0.010
0.015
1.563 1.619
1.614
1.657
0.007
0.024
0.009
1.630
gi|50935131 Cellulose synthase-4 1.519
1.414
1.434
0.028
0.015
0.014
1.456 1.675
1.675
1.656
0.030
0.023
0.030
1.669 1.619
1.614
1.645
0.007
0.029
0.011
1.626 1.719
1.714
1.734
0.003
0.015
0.005
1.722
gi|4126809 Glyoxalase I 1.319
1.214
1.323
0.014
0.010
0.014
1.285 1.656
1.756
1.668
0.032
0.005
0.021
1.693 1.519
1.514
1.656
0.025
0.024
0.005
1.563 1.719
1.714
1.756
0.005
0.009
0.021
1.730
Antiporters
gi|50251178 Putative Na+/H+ antiporter 0.680
0.780
0.705
0.013
0.026
0.021
0.722 0.492
0.451
0.422
0.033
0.021
0.022
0.455 0.824
0.903
0.843
0.009
0.030
0.004
0.857 0.932
0.924
0.978
0.010
0.027
0.031
0.945
gi|295048558 Sodium/proton antiporter 0.693
0.680
0.637
0.006
0.005
0.008
0.670 0.462
0.512
0.479
0.019
0.028
0.030
0.484 0.718
0.747
0.766
0.003
0.027
0.006
0.744 0.986
0.916
0.983
0.008
0.012
0.011
0.962
gi|57117296 Na+/H+ antiporter 0.814
0.714
0.703
0.001
0.021
0.015
0.744 0.413
0.495
0.464
0.004
0.022
0.001
0.457 0.734
0.853
0.825
0.011
0.032
0.030
0.804 0.908
0.895
0.915
0.005
0.005
0.023
0.906
STRUCTURAL PROTEINS
gi|77548553 Auxin Efflux Carrier family protein 0.662
0.797
0.638
0.008
0.022
0.017
0.699 0.928
0.803
0.844
0.016
0.003
0.002
0.558 0.617
0.620
0.629
0.021
0.018
0.001
0.622 0.451
0.441
0.510
0.016
0.013
0.007
0.467
gi|541905597 Auxin efflux carrier 1b 0.676
0.645
0.749
0.033
0.024
0.028
0.690 0.520
0.461
0.438
0.016
0.003
0.022
0.473 0.701
0.720
0.763
0.023
0.017
0.010
0.728 0.818
0.822
0.823
0.008
0.021
0.007
0.521
gi|22831004 Plasma membrane intrinsic protein 0.718
0.726
0.784
0.009
0.019
0.004
0.543 0.818
0.826
0.867
0.021
0.001
0.006
0.837 0.618
0.626
0.656
0.023
0.010
0.025
0.633 0.445
0.454
0.446
0.022
0.009
0.014
0.448
gi|31193906 Putative plasma membrane intrinsic protein 0.719
0.702
0.645
0.029
0.018
0.026
0.689 0.454
0.504
0.446
0.001
0.019
0.023
0.468 0.719
0.702
0.767
0.020
0.030
0.029
0.729 0.919
0.902
0.945
0.028
0.018
0.017
0.922
gi|22831256 Putative plasma membrane integral protein 0.724
0.726
0.704
0.012
0.015
0.002
0.518 0.454
0.464
0.447
0.032
0.020
0.028
0.455 0.624
0.626
0.645
0.013
0.031
0.031
0.632 0.824
0.826
0.867
0.001
0.010
0.000
0.839
gi|385718822 ATP/ADP translocator protein 0.696
0.658
0.667
0.007
0.009
0.004
0.674 0.696
0.658
0.534
0.002
0.004
0.014
0.529 0.796
0.658
0.603
0.019
0.002
0.026
0.686 0.432
0.430
0.445
0.002
0.024
0.013
0.436
AQUAPORINS
gi|3135543 Aquaporin 0.584
0.530
0.454
0.015
0.026
0.009
0.523 0.784
0.730
0.756
0.014
0.018
0.023
0.757 0.584
0.530
0.567
0.019
0.010
0.024
0.560 0.498
0.483
0.460
0.033
0.005
0.003
0.480
gi|108712233 Aquaporin PIP2.8 0.798
0.725
0.756
0.002
0.020
0.012
0.760 0.798
0.625
0.735
0.008
0.001
0.031
0.519 0.898
0.825
0.787
0.018
0.002
0.016
0.837 0.515
0.504
0.434
0.025
0.028
0.033
0.484
gi|110289400 Aquaporin NIP5.1 0.725
0.736
0.642
0.014
0.001
0.001
0.701 0.515
0.456
0.465
0.024
0.000
0.010
0.479 0.425
0.456
0.454
0.032
0.024
0.013
0.445 0.525
0.536
0.535
0.005
0.002
0.018
0.532
gi|110289278 Aquaporin PIP2.4 0.785
0.7120
0.723
0.026
0.017
0.031
0.540 0.885
0.820
0.856
0.017
0.024
0.020
0.854 0.685
0.620
0.745
0.013
0.010
0.010
0.583 0.464
0.454
0.465
0.020
0.029
0.021
0.661
SIGNAL AND HORMONE RELATED PROTEINS
gi|52076930 Putative cyclic nucleotide gated channel homolog 1.474
1.468
1.498
0.003
0.029
0.012
1.480 1.674
1.668
1.656
0.007
0.021
0.033
1.666 1.474
1.468
1.465
0.016
0.012
0.026
1.469 1.412
1.434
1.356
0.010
0.031
0.015
1.401
gi|20190 Calmodulin 0.765
0.765
0.776
0.004
0.004
0.021
0.769 0.783
0.719
0.638
0.031
0.029
0.009
0.513 0.876
0.867
0.865
0.030
0.033
0.014
0.869 0.454
0.460
0.476
0.003
0.032
0.002
0.463
gi|7271253 14-3-3-like protein 0.454
0.452
0.472
0.026
0.005
0.015
0.459 0.765
0.778
0.745
0.005
0.014
0.027
0.763 0.554
0.552
0.545
0.014
0.032
0.009
0.550 0.754
0.752
0.756
0.024
0.027
0.023
0.754
gi|34897868 Putative extra-large G-protein 1.519
1.414
1.423
0.015
0.023
0.023
1.452 1.787
1.674
1.734
0.023
0.013
0.030
1.732 1.519
1.534
1.546
0.017
0.011
0.001
1.533 1.719
1.714
1.756
0.031
0.003
0.020
1.730
gi|13195452 GTP-binding protein 1.419
1.414
1.321
0.026
0.032
0.008
1.385 1.656
1.667
1.697
0.006
0.020
0.024
1.673 1.519
1.514
1.576
0.026
0.014
0.006
1.536 1.719
1.714
1.676
0.005
0.032
0.009
1.703
gi|6983881 Putative gibberellin response modulator 0.554
0.643
0.552
0.010
0.024
0.014
0.583 0.754
0.752
0.767
0.029
0.009
0.011
0.758 0.554
0.552
0.565
0.012
0.015
0.017
0.557 0.454
0.445
0.434
0.002
0.030
0.026
0.444
gi|75131369 Thioredoxin-like 4 0.554
0.552
0.483
0.005
0.007
0.013
0.530 1.504
1.502
1.553
0.027
0.003
0.017
1.520 0.854
0.852
0.845
0.030
0.024
0.025
0.850 0.348
0.346
0.334
0.016
0.022
0.024
0.343
gi|57899336 Thioredoxin family Trp26-like protein 0.519
0.714
0.645
0.012
0.000
0.024
0.526 0.389
0.378
0.3786
0.009
0.020
0.026
0.382 0.819
0.814
0.878
0.021
0.005
0.012
0.637 1.519
1.614
1.656
0.019
0.033
0.013
0.796

Protein Phospholipase D was bold-marked for further analysis in this study.

The differentially regulated proteins induced by cadmium and cadmium and S-nitroso-N-acetylpenicillamine (SNAP) in enriched plasma membrane from rice analyzed after using isobaric tags for relative and absolute quantification (iTRAQ).

a

NCBI gene number ID.

b

three repeated iTRAQ experiments between Cd treatment for 12 h and control without any treatment.

c

three repeated iTRAQ experiments between Cd treatment for 1 day and control without any treatment.

d

three repeated iTRAQ experiments between Cd treatment plus SNAP for 12 h and control without any treatment.

e

three repeated iTRAQ experiments between Cd treatment plus SNAP for 1 day and control without any treatment.