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. 2016 Feb 25;54(3):593–612. doi: 10.1128/JCM.01818-15

TABLE 1.

Date of isolation, sequencing, and assembly statistics for new Acinetobacter bloodstream and outbreak isolates

Isolate Culture date (mo/day/yr) Avg read length (bp) No. of raw reads Predicted coverage (fold) No. of raw reads after downsampling No. of contigs >500 bp Total size of contigs >500 bp (bp) Contig N50 (bp) SRA accession no. GenBank WGS accession no.a
ABBL001 1/30/2005 101 5,751,032 145 3,168,318 79 3,871,836 122,252 SRR2558732 LLCI00000000
ABBL003 2/25/2005 101 5,878,804 148 3,168,318 72 3,959,187 114,915 SRR2558733 LLCJ00000000
ABBL004 5/17/2005 101 4,935,656 125 3,168,318 76 3,857,255 129,801 SRR2558836 LLCK00000000
ABBL005 6/21/2005 101 5,456,552 138 3,168,318 66 4,105,919 146,012 SRR2558848 LLCL00000000
ABBL006 7/6/2005 101 5,276,928 133 3,168,318 79 4,070,748 92,563 SRR2558860 LLCM00000000
ABBL007 8/1/2005 234 4,672,638 273 1,367,522 770 3,762,155 8,012 SRR2558871 LLCN00000000
ABBL008 8/11/2005 101 6,100,156 154 3,168,318 89 4,066,927 139,396 SRR2558883 LLCO00000000
ABBL010 8/15/2005 101 5,917,234 149 3,168,318 62 4,050,651 126,884 SRR2558907 LLCQ00000000
ABBL011 9/4/2005 101 5,431,532 137 3,168,318 71 4,006,992 118,605 SRR2558919 LLCR00000000
ABBL012 9/23/2005 101 6,780,124 171 3,168,318 87 3,927,097 110,206 SRR2558734 LLCS00000000
ABBL013 9/19/2005 101 4,344,706 110 3,168,318 138 4,010,638 85,500 SRR2558776 LLCT00000000
ABBL014 9/25/2005 101 6,420,868 162 3,168,318 193 3,857,237 52,131 SRR2558787 LLCU00000000
ABBL015 10/23/2005 101 6,262,008 158 3,168,318 68 4,191,244 186,354 SRR2558808 LLCV00000000
ABBL016 11/7/2005 101 6,536,664 165 3,168,318 35 3,880,175 212,743 SRR2558820 LLCW00000000
ABBL017 11/16/2005 101 5,637,164 142 3,168,318 92 4,028,200 106,423 SRR2558831 LLCX00000000
ABBL018 12/9/2005 101 4,978,776 126 3,168,318 125 4,318,316 105,657 SRR2558832 LLCY00000000
ABBL019 12/13/2005 101 5,935,086 150 3,168,318 24 3,888,930 343,426 SRR2558833 LLCZ00000000
ABBL020 1/17/2006 101 7,809,576 197 3,168,318 83 3,806,309 108,333 SRR2558834 LLDA00000000
ABBL021 1/31/2006 101 7,992,930 202 3,168,318 64 3,952,727 132,629 SRR2558835 LLDB00000000
ABBL022 2/22/2006 101 6,912,504 175 3,168,318 83 3,994,985 105,023 SRR2558837 LLDC00000000
ABBL023 3/21/2006 232 7,041,594 408 1,382.290 579 3,982,278 12,335 SRR2558838 LLDD00000000
ABBL024 4/4/2006 101 4,864,248 123 3,168,318 91 3,892,382 107,246 SRR2558839 LLDE00000000
ABBL025 4/24/2006 101 5,678,228 143 3,168,318 71 4,070,327 171,086 SRR2558840 LLDF00000000
ABBL026 5/1/2006 217 10,727,026 581 1,478,060 602 3,906,420 10,017 SRR2558841 LLDG00000000
ABBL027 5/13/2006 251 2,226,438 140 1,274,900 84 4,051,543 115,039 SRR2558842 LLDH00000000
ABBL028 5/25/2006 239 585,626 35 NAb 909 3,667,117 6,740 SRR2558843 LLDI00000000
ABBL029 6/5/2006 101 5,887,830 149 3,168,318 90 3,922,574 87,612 SRR2558844 LLDJ00000000
ABBL030 7/4/2006 251 2,237,610 140 1,274,900 93 4,022,189 84,636 SRR2558846 LLDK00000000
ABBL031 8/9/2006 151 2,697,432 102 2,119,206 82 4,143,212 122,907 SRR2558847 LLDL00000000
ABBL032 8/31/2006 101 7,469,508 189 3,168,318 111 3,917,819 66,618 SRR2558849 LLDM00000000
ABBL033 11/6/2006 101 7,242,078 183 3,168,318 119 3,800,726 75,277 SRR2558850 LLDN00000000
ABBL034 1/9/2007 101 6,643,438 168 3,168,318 89 4,041,141 111,495 SRR2558851 LLDO00000000
ABBL035 1/23/2007 232 3,782,874 219 1,379,310 966 3,811,475 6,705 SRR2558852 LLDP00000000
ABBL036 6/8/2007 101 14,194,932 358 3,168,318 500 3,816,808 15,165 SRR2558853 LLDQ00000000
ABBL037 6/20/2007 101 8,609,660 217 3,168,318 75 4,179,466 109,239 SRR2558854 LLDR00000000
ABBL038 7/7/2007 101 10,957,150 277 3,168,318 86 4,045,591 110,028 SRR2558855 LLDS00000000
ABBL039 8/2/2007 101 8,767,486 221 3,168,318 118 4,005,659 59,483 SRR2558856 LLDT00000000
ABBL040 8/12/2007 101 11,439,386 289 3,168,318 439 3,889,680 16,992 SRR2558857 LLDU00000000
ABBL041 8/12/2007 101 5,683,398 144 3,168,318 105 4,014,785 85,413 SRR2558858 LLDV00000000
ABBL042 8/13/2007 251 2,148,934 135 1,274,900 104 4,023,065 95,503 SRR2558861 LLDW00000000
ABBL043 8/28/2007 251 2,304,972 145 1,274,900 113 4,193,893 79,829 SRR2558862 LLDX00000000
ABBL044 9/20/2007 251 2,114,926 133 1,274,900 107 4,108,999 64,973 SRR2558863 LLDY00000000
ABBL045 9/20/2007 101 8,425,048 213 3,168,318 103 4,052,607 101,492 SRR2558864 LLDZ00000000
ABBL046 10/14/2007 101 11,383,666 287 3,168,318 117 3,917,523 70,298 SRR2558865 LLEA00000000
ABBL047 10/28/2007 101 6,941,066 175 3,168,318 57 4,100,149 154,707 SRR2558866 LLEB00000000
ABBL048 11/27/2007 251 2,144,992 135 1,274,900 75 4,161,657 120,446 SRR2558867 LLEC00000000
ABBL049 12/12/2007 251 2,480,548 156 1,274,900 88 4,142,974 116,905 SRR2558868 LLED00000000
ABBL050 1/22/2008 101 13,089,350 331 3,168,318 292 4,173,128 27,050 SRR2558869 LLEE00000000
ABBL051 1/31/2008 101 13,714,298 346 3,168,318 858 3,801,250 7,151 SRR2558870 LLEF00000000
ABBL052 2/24/2008 101 8,137,460 205 3,168,318 106 4,109,803 75,223 SRR2558873 LLEG00000000
ABBL053 3/17/2008 101 7,715,994 195 3,168,318 88 4,085,835 90,003 SRR2558874 LLEH00000000
ABBL054 3/22/2008 101 11,043,836 279 3,168,318 108 3,435,547 70,480 SRR2558875 LLEZ00000000
ABBL055 4/5/2008 101 9,541,470 241 3,168,318 110 4,102,482 60,720 SRR2558876 LLFA00000000
ABBL056 7/11/2008 101 7,449,168 188 3,168,318 84 4,012,566 80,470 SRR2558877 LLFB00000000
ABBL057 7/22/2008 101 7,511,856 190 3,168,318 78 4,016,266 236,259 SRR2558878 LLFC00000000
ABBL058 7/25/2008 101 9,584,202 242 3,168,318 117 4,010,913 80,750 SRR2558879 LLFD00000000
ABBL059 8/7/2008 101 5,781,700 146 3,168,318 226 3,989,506 37,323 SRR2558880 LLFE00000000
ABBL060 9/15/2008 101 20,003,004 505 3,168,318 198 4,033,351 37,283 SRR2558881 LLFF00000000
ABBL061 9/29/2008 101 5,134,402 130 3,168,318 93 3,960,869 101,526 SRR2558882 LLFG00000000
ABBL062 10/1/2008 101 5,970,402 151 3,168,318 72 3,873,658 103,774 SRR2558884 LLFH00000000
ABBL063 10/23/2008 101 10,606,350 268 3,168,318 263 3,680,335 27,301 SRR2558885 LLFI00000000
ABBL064 12/8/2008 101 12,685,308 320 3,168,318 479 3,871,975 15404 SRR2558886 LLFJ00000000
ABBL065 12/9/2008 101 8,501,444 215 3,168,318 75 4,039,674 154,921 SRR2558887 LLFK00000000
ABBL066 12/11/2008 101 8,860,706 224 3,168,318 72 4,319,668 106,135 SRR2558889 LLFL00000000
ABBL067 12/21/2008 101 4,584,514 116 3,168,318 78 4,032,722 114,946 SRR2558890 LLFM00000000
ABBL067a 5/12/2005 101 12,508,224 316 3,168,318 320 3,992,826 22,794 SRR2558891 LLFN00000000
ABBL067b 9/14/2005 101 13,860,118 350 3,168,318 357 4,059,209 22,441 SRR2558892 LLFO00000000
ABBL067c 12/25/2005 101 12,256,156 309 3,168,318 396 4,013,666 19,274 SRR2558893 LLFP00000000
ABBL067e 12/25/2005 101 13,185,332 333 3,168,318 370 3,999,590 21,308 SRR2558894 LLFQ00000000
ABBL067f 1/11/2006 101 12,775,890 323 3,168,318 444 3,969,780 16,568 SRR2558896 LLFR00000000
ABBL067g 1/22/2006 101 12,501,658 316 3,168,318 431 3,971,931 16,858 SRR2558897 LLFS00000000
ABBL067h 4/3/2006 101 12,791,622 323 3,168,318 404 4,002,856 19,517 SRR2558898 LLFT00000000
ABBL067i 4/23/2006 101 6,390,358 161 3,168,318 418 3,982,233 17,399 SRR2558900 LLFU00000000
ABBL067j 5/20/2007 101 10,486,564 265 3,168,318 136 4,088,444 52,671 SRR2558901 LLFV00000000
ABBL067k 12/12/2007 101 6,091,926 154 3,168,318 98 4,002,082 82,155 SRR2558902 LLFW00000000
ABBL067l 1/16/2008 101 8,391,138 212 3,168,318 102 4,001,051 86,209 SRR2558903 LLFX00000000
ABBL068 1/14/2009 101 6,696,118 169 3,168,318 215 4,134,094 35,378 SRR2558904 LLFY00000000
ABBL069 2/2/2009 101 32,813,908 829 3,168,318 319 4,091,029 25,495 SRR2558905 LLFZ00000000
ABBL070 2/5/2009 101 26,881,038 679 3,168,318 265 4,020,734 31,563 SRR2558906 LLGA00000000
ABBL071 4/5/2009 101 6,291,266 159 3,168,318 116 4,093,661 63,583 SRR2558908 LLGB00000000
ABBL072 4/9/2009 101 23,436,746 592 3,168,318 198 4,324,713 45,835 SRR2558909 LLGC00000000
ABBL073 4/22/2009 101 16,950,024 428 3,168,318 131 4,092,205 78,381 SRR2558910 LLGD00000000
ABBL074 5/4/2009 101 7,723,174 195 3,168,318 211 3,975,531 36,237 SRR2558911 LLGE00000000
ABBL075 5/12/2009 101 26,829,806 677 3,168,318 288 4,159,435 30,922 SRR2558912 LLGF00000000
ABBL076 5/25/2009 101 13,587,060 343 3,168,318 386 3,868,391 19,568 SRR2558913 LLGG00000000
ABBL077 5/26/2009 101 35,514,828 897 3,168,318 305 3,957,932 27,593 SRR2558914 LLGH00000000
ABBL078 6/15/2009 101 16,773,812 424 3,168,318 297 3,973,781 24,307 SRR2558916 LLGI00000000
ABBL079 7/3/2009 101 28,887,508 729 3,168,318 342 4,265,921 22,807 SRR2558917 LLGJ00000000
ABBL080 8/7/2009 101 26,434,436 667 3,168,318 428 3,976,763 19,694 SRR2558918 LLGK00000000
ABBL082 9/1/2009 101 25,406,536 642 3,168,318 292 3,852,334 25,470 SRR2558920 LLGL00000000
ABBL083 8/30/2009 101 30,989,798 782 3,168,318 301 3,940,840 25,555 SRR2558921 LLGM00000000
ABBL085 9/11/2009 101 27,206,694 687 3,168,318 241 3,813,467 29,772 SRR2558922 LLGN00000000
ABBL086 9/10/2009 101 16,590,444 419 3,168,318 348 4,058,485 22,997 SRR2558923 LLGO00000000
ABBL088 9/13/2009 101 17,105,376 432 3,168,318 330 4,021,290 25,565 SRR2558924 LLGP00000000
ABBL089 10/6/2009 101 34,503,130 871 3,168,318 327 3,997,927 26,072 SRR2558925 LLGQ00000000
ABBL090 10/9/2009 101 38,910,236 982 3,168,318 310 3,817,936 24,138 SRR2558926 LLGR00000000
ABBL091 11/7/2009 101 28,234,296 713 3,168,318 436 4,115,100 19,684 SRR2558927 LLGS00000000
ABBL092 11/13/2009 101 30,855,824 779 3,168,318 399 3,883,553 19,303 SRR2558928 LLGT00000000
ABBL093 11/12/2009 101 19,490,714 492 3,168,318 309 3,874,412 25,329 SRR2558929 LLGU00000000
ABBL094 12/14/2009 101 18,463,954 466 3,168,318 369 3,903,234 19,927 SRR2558737 LLGV00000000
ABBL095 12/19/2009 101 12,628,086 319 3,168,318 218 3,885,321 30,203 SRR2558739 LLGW00000000
ABBL096 1/20/2010 101 37,281,074 941 3,168,318 306 3,898,693 23,502 SRR2558766 LLGX00000000
ABBL097 2/19/2010 101 29,085,722 734 3,168,318 261 3,905,810 28,228 SRR2558767 LLGY00000000
ABBL098 3/6/2010 101 25,439,548 642 3,168,318 269 3,853,967 27,320 SRR2558768 LLGZ00000000
ABBL099 3/6/2010 101 17,538,744 443 3,168,318 231 3,840,161 27,302 SRR2558769 JPDG00000000
ABBL100 4/9/2010 101 27,451,932 693 3,168,318 241 3,939,568 30,882 SRR2558772 LLHA00000000
ABBL101 5/3/2010 101 19,403,912 490 3,168,318 382 3,931,279 20,041 SRR2558773 LLHB00000000
ABBL102 6/4/2010 101 14,401,494 364 3,168,318 231 3,776,367 31,608 SRR2558774 LLHC00000000
ABBL103 7/29/2010 101 12,252,832 309 3,168,318 207 3,987,056 37,009 SRR2558775 LLHD00000000
ABBL105 9/6/2010 101 37,753,256 953 3,168,318 376 4,118,335 21,631 SRR2558777 LLHE00000000
ABBL106 9/6/2010 101 40,287,706 1,017 3,168,318 370 4,124,964 21,780 SRR2558778 LLHF00000000
ABBL107 9/6/2010 101 22,537,832 569 3,168,318 292 3,979,777 27,143 SRR2558779 LLHG00000000
ABBL109 9/6/2010 101 22,392,882 565 3,168,318 279 3,954,675 29,282 SRR2558780 LLHH00000000
ABBL110 9/27/2010 101 15,009,192 379 3,168,318 250 3,694,263 30,739 SRR2558781 LLHI00000000
ABBL111 11/16/2010 101 28,853,656 729 3,168,318 419 4,108,846 24,331 SRR2558782 LLHJ00000000
ABBL113 12/15/2010 101 14,977,074 378 3,168,318 308 4,019,479 26,483 SRR2558783 LLHK00000000
ABBL114 1/20/2011 101 39,589,430 1,000 3,168,318 337 4,137,977 25,732 SRR2558784 LLHL00000000
ABBL115 2/21/2011 101 32,786,960 828 3,168,318 487 3,942,056 15,490 SRR2558785 LLHM00000000
ABBL116 2/26/2011 101 12,053,200 304 3,168,318 377 4,044,273 23,431 SRR2558786 LLHN00000000
ABBL117 3/24/2011 101 16,212,654 409 3,168,318 550 4,115,897 14,029 SRR2558788 LLHO00000000
ABBL118 4/5/2011 101 28,120,660 710 3,168,318 419 3,938,213 18,512 SRR2558790 LLHP00000000
ABBL120 6/16/2011 101 13,437,746 339 3,168,318 536 3,979,007 14,187 SRR2558791 LLHQ00000000
ABBL121 7/25/2011 101 6,002,822 152 3,168,318 466 4,039,842 17,305 SRR2558792 LLHR00000000
ABBL122 7/30/2011 101 40,444,704 1,021 3,168,318 306 3,922,223 23,597 SRR2558797 LLHS00000000
ABBL123 8/23/2011 101 14,220,382 359 3,168,318 596 3,795,535 12,218 SRR2558798 LLHT00000000
ABBL124 9/3/2011 101 4,054,356 102 3,168,318 197 4,013,619 34,239 SRR2558799 LLHU00000000
ABBL125 11/8/2011 101 20,151,532 509 3,168,318 456 3,780,263 15,263 SRR2558800 LLHV00000000
ABBL126 11/8/2011 101 20,027,030 506 3,168,318 349 3,821,336 20,964 SRR2558805 LLHW00000000
ABBL127 11/13/2011 101 9,442,450 238 3,168,318 356 4,152,329 22,917 SRR2558807 LLHX00000000
ABBL128 11/23/2011 101 20,775,318 525 3,168,318 458 3,950,643 19,092 SRR2558809 LLHY00000000
ABBL129 1/5/2012 101 5,353,678 135 3,168,318 186 4,027,647 38,732 SRR2558810 LLHZ00000000
ABBL130 2/12/2012 101 22,383,756 565 3,168,318 343 3,932,290 21,064 SRR2558811 LLIA00000000
ABBL131 2/14/2012 101 16,386,078 414 3,168,318 394 3,989,817 19,923 SRR2558812 LLIB00000000
ABBL132 3/2/2012 101 23,009,154 581 3,168,318 383 3,983,304 19,969 SRR2558813 LLIC00000000
ABBL133 3/19/2012 101 14,862,736 375 3,168,318 361 3,930,248 21,247 SRR2558814 LLID00000000
ABBL134 3/22/2012 101 19,728,578 498 3,168,318 369 4,054,261 23,792 SRR2558815 LLIE00000000
ABBL135 5/1/2012 101 24,722,876 624 3,168,318 495 3,915,368 17,220 SRR2558816 LLIF00000000
ABBL137 5/14/2012 101 17,330,758 438 3,168,318 428 3,919,186 18,907 SRR2558818 LLIG00000000
ABBL138 5/18/2012 101 16,430,912 415 3,168,318 435 3,882,593 17,739 SRR2558819 LLIH00000000
ABBL140 6/9/2012 101 49,913,702 1,260 3,168,318 543 3,869,396 13,065 SRR2558822 LLII00000000
ABBL141 6/12/2012 101 13,875,892 350 3,168,318 367 4,236,436 23,187 SRR2558824 LLIJ00000000
ABBL142 7/31/2012 101 11,970,574 302 3,168,318 259 3,978,019 29,463 SRR2558825 LLIK00000000
ABBL143 8/31/2012 101 79,935,976 2,018 3,168,318 478 3,908,504 16,117 SRR2558826 LLIL00000000
ABBL144 9/16/2012 101 14,559,986 368 3,168,318 381 3,943,688 20,834 SRR2558827 LLIM00000000
ABBL147 10/10/2012 101 28,332,702 715 3,168,318 395 3,716,396 19,347 SRR2558828 LLIN00000000
ABBL148 10/22/2012 101 20,550,420 519 3,168,318 423 3,549,950 15,415 SRR2558829 LLIO00000000
ABBL149 11/10/2012 101 30,202,168 763 3,168,318 373 3,794,913 19,926 SRR2558830 LLIP00000000
ABOB01 6/20/2013 101 7,652,372 193 3,168,318 139 4,062,889 58,695 SRR2559322 LLIQ00000000
ABOB02 6/29/2013 101 14,825,292 374 3,168,318 389 3,963,019 18,994 SRR2559323 LLIR00000000
ABOB03 7/2/2013 101 16,796,756 424 3,168,318 370 3,977,012 21,240 SRR2559352 LLIS00000000
ABOB04 8/31/2013 101 19,297,440 487 3,168,318 304 3,971,774 23,905 SRR2559353 LLIT00000000
ABOB04_a 9/9/2013 101 16,698,092 422 3,168,318 364 3,978,511 21,753 SRR2559354 LLIU00000000
ABOB04_b 11/16/2013 101 15,920,118 402 3,168,318 432 4,049,068 19,216 SRR2559355 LLIV00000000
ABOB06 10/25/2013 101 13,923,144 352 3,168,318 278 3,993,533 27,005 SRR2559356 LLIW00000000
ABOB06_a 11/21/2013 101 20,292,790 512 3,168,318 602 3,891,945 10,555 SRR2559357 LLIX00000000
ABOB07 10/30/2013 101 25,414,296 642 3,168,318 1,081 3,836,895 5,674 SRR2559358 LLIY00000000
ABOB08 10/31/2013 101 15,633,066 395 3,168,318 418 3,993,223 19,275 SRR2559359 LLIZ00000000
ABOB09 11/8/2013 101 19,274,076 487 3,168,318 375 3,945,737 20,698 SRR2559324 LLJA00000000
ABOB10 11/15/2013 101 17,320,904 437 3,168,318 460 3,948,321 17,481 SRR2559325 LLJB00000000
ABOB11 11/16/2013 101 20,312,352 513 3,168,318 401 3,953,603 20,420 SRR2559326 LLJC00000000
ABOB12 11/18/2013 101 17,876,054 451 3,168,318 284 4,086,064 27,116 SRR2559327 LLJD00000000
ABOB15 Unknown 101 15,080,752 381 3,168,318 89 4,021,456 84,258 SRR2559328 LLJE00000000
ABOB16 Unknown 101 16,396,238 414 3,168,318 324 3,852,656 22,273 SRR2559329 LLJF00000000
ABOBEN Unknown 101 18,111,886 457 3,168,318 381 3,940,575 20,023 SRR2559351 LLJG00000000
a

WGS, whole-genome sequencing.

b

NA, not available.