. 2016 Feb 29;7:212. doi: 10.3389/fmicb.2016.00212

Table 1.

D1/D2 sequence differences of selected representatives of the phenotypic groups of isolates from type strains of the most similar species.

Isolate			Most similar type/reference strain		Sequence difference (number of substitutions/indels)
Identification number	Location of sample collection	D1/D2 accession number	Taxonomic name	D1/D2 accession number	Sequence difference (number of substitutions/indels)
ASCOMYCOTA, PEZIZOMYCOTINA
10–59	Malá Tŕňa	KU254559	Aureobasidium subglaciale CBS 123387^T	FJ150913	0
1/2–11	Szegi		Kabatiella microsticta CBS 342.66 Columnosphaeria fagi CBS 171.93	FJ150952 AY016359	0 0
6/1–5	Bara	KU254558	Kabatiella microsticta CBS 342.66 Columnosphaeria fagi CBS 171.93	FJ150952 AY016359	0 0
13/1–4	Tolcsva		Kabatiella microsticta CBS 342.66 Columnosphaeria fagi CBS 171.93	FJ150952 AY016359	0 0
ASCOMYCOTA, SACCHAROMYCOTINA
14/1z-1	Erdöbénye	KT933331	Candida glabrata CBS 138^T	AF399771	1
11/1–54	Malá Tŕňa		Candida oleophila CBS 2219^T	U45793	0
11/1-55	Malá Tŕňa	KT122406	Candida oleophila CBS 2219^T	U45793	0
7-9	Bara		Kregervanrija fluxuum CBS 639^T	U70247	3^z
1/1z-2	Szegi		Hanseniaspora osmophila CBS 313^T	U84228	0
2z-22	Sárazsadány		Hanseniaspora osmophila CBS 313^T	U84228	0
4–3	Hercegkút		Hanseniaspora osmophila CBS 313^T	U84228	0
4z-5	Hercegkút		Hanseniaspora osmophila CBS 313^T	U84228	0
5/1z-3	Vinièky		Hanseniaspora osmophila CBS 313^T	U84228	0
5/2–6	Viničky		Hanseniaspora osmophila CBS 313^T	U84228	1^z
5/2z-6	Viničky		Hanseniaspora osmophila CBS 313^T	U84228	0
5/2z-11	Viničky		Hanseniaspora osmophila CBS 313^T	U84228	1^z
7/2z-1	Bara		Hanseniaspora osmophila CBS 313^T	U84228	0
8–3	Černochov	KT933332	Hanseniaspora osmophila CBS 313^T	U84228	0
8z-4	Černochov	KT175536	Hanseniaspora osmophila CBS 313^T	U84228	0
9z-3	Malá Tŕňa		Hanseniaspora osmophila CBS 313^T	U84228	0
11/2z-2	Malá Tŕňa		Hanseniaspora osmophila CBS 313^T	U84228	0
12/2z-3	Tolcsva		Hanseniaspora osmophila CBS 313^T	U84228	0
13/2–90	Tolcsva		Hanseniaspora osmophila CBS 313^T	U84228	0
13/2z-5	Tolcsva		Hanseniaspora osmophila CBS 313^T	U84228	0
15z-4	Abaújszántó		Hanseniaspora osmophila CBS 313^T	U84228	0
1–3	Szegi		Hanseniaspora uvarum CBS 314^T	U84229	0
1z-2	Szegi		Hanseniaspora uvarum CBS 314^T	U84229	0
1/1–32	Szegi		Hanseniaspora uvarum CBS 314^T	U84229	0
2–4	Sárazsadány		Hanseniaspora uvarum CBS 314^T	U84229	0
4/1–6	Hercegkút		Hanseniaspora uvarum CBS 314^T	U84229	0
7–3	Bara		Hanseniaspora uvarum CBS 314^T	U84229	0
7/2–17	Bara		Hanseniaspora uvarum CBS 314^T	U84229	0
8/2-28	Černochov		Hanseniaspora uvarum CBS 314^T	U84229	0
9/1–3	Malá Tŕňa		Hanseniaspora uvarum CBS 314^T	U84229	0
9/1–66	Malá Tŕňa	KT156710	Hanseniaspora uvarum CBS 314^T	U84229	0
11/1–10	Malá Tŕňa		Hanseniaspora uvarum CBS 314^T	U84229	0
13/2–4	Tolcsva		Hanseniaspora uvarum CBS 314^T	U84229	0
14/1–7	Erdöbénye		Hanseniaspora uvarum CBS 314^T	U84229	0
15/1–10	Abaújszántó		Hanseniaspora uvarum CBS 314^T	U84229	0
15/2–1	Abaújszántó		Hanseniaspora uvarum CBS 314^T	U84229	0
16–5	Mád		Hanseniaspora uvarum CBS 314^T	U84229	0
16/2–2	Mád		Hanseniaspora uvarum CBS 314^T	U84229	0
1/1–5	Szegi		Hanseniaspora vineae CBS 2171^T	U84224 ^x	3
11/1z-4	Malá Tŕňa	KT933333	Hanseniaspora vineae CBS 2171^T	U84224 ^x	1
12/1z-2	Tolcsva		Hanseniaspora vineae CBS 2171^T	U84224 ^x	4
12/1z-5	Tolcsva		Hanseniaspora vineae CBS 2171^T	U84224 ^x	4
5z-9	Viničky		Kluyveromyces dobzhanskii CBS 2104^T	U69575	0
5z-17	Viničky		Kluyveromyces dobzhanskii CBS 2104^T	U69575	0
7/1z-5	Bara		Kluyveromyces dobzhanskii CBS 2104^T	U69575	0
9/z-1	Malá Tàòa		Kluyveromyces dobzhanskii CBS 2104^T	U69575	0
9z-6	Malá Tŕňa	KT122408	Kluyveromyces dobzhanskii CBS 2104^T	U69575	0
10z-4	Malá Tŕňa		Kluyveromyces dobzhanskii CBS 2104^T	U69575	0
10/1z-1	Malá Tŕňa		Kluyveromyces dobzhanskii CBS 2104^T	U69575	0
2/2z-8	Sárazsadány		Lachancea thermotolerans CBS 6340^T	U69581	0
5/1z-7	Viničky		Lachancea thermotolerans CBS 6340^T	U69581	0
8z-1	Černochov	KT175534	Lachancea thermotolerans CBS 6340^T	U69581	0
8/2z-3	Černochov	KT933334	Lachancea thermotolerans CBS 6340^T	U69581	0
9/1-15	Malá Tŕňa		Lachancea thermotolerans CBS 6340^T	U69581	0
9/1z-4	Malá Tŕňa		Lachancea thermotolerans CBS 6340^T	U69581	0
10/2z-4	Malá Tŕňa		Lachancea thermotolerans CBS 6340^T	U69581	0
11–27	Malá Tŕňa		Lachancea thermotolerans CBS 6340^T	U69581	0
11z-1	Malá Tŕňa		Lachancea thermotolerans CBS 6340^T	U69581	0
11/2–112	Malá Tŕňa		Lachancea thermotolerans CBS 6340^T	U69581	0
14/1z-2	Erdöbénye		Lachancea thermotolerans CBS 6340^T	U69581	0
3z-1	Hercegkút		Metschnikowia sp. 11-1090 clone d4	KM350710	11
5z-6	Viničky	KT933337	Pichia fermentans CBS 187^T	U75726	2
5z-10	Viničky		Pichia fermentans CBS 187^T	U75726	2^y
5z-12	Viničky		Pichia fermentans CBS 187^T	U75726	1
11/2–104	Malá Tŕňa	KT156709	Pichia kluyveri CBS 188^T	U75727 ^x	1
4/1–34	Hercegkút	KT933335	Pichia membranifaciens CBS 2763^T	DQ198963	3
15/1z-9	Abaújszántó		Pichia membranifaciens CBS 2763^T	DQ198963	3
12z-4	Tolcsva	KT933336	Pichia scaptomyzae CBS 8167^T	AB045136	0
12z-14	Tolcsva		Pichia scaptomyzae CBS 8167^T	AB045136	0
3/1z-5	Hercegkút		Saccharomyces cerevisiae CBS 1171^NT	U44806	0
14/z-1	Erdöbénye	KT933338	Saccharomyces cerevisiae CBS 1171^NT	U44806	0
3z-28	Hercegkút		Saccharomyces paradoxus CBS 432^NT	U68555	2
3/2z-5	Hercegkút		Saccharomyces paradoxus CBS 432^NT	U68555	2
5z-7	Viničky		Saccharomyces paradoxus CBS 432^NT	U68555	2
7/2z-2	Bara		Saccharomyces paradoxus CBS 432^NT	U68555	2
7/2z-3	Bara		Saccharomyces paradoxus CBS 432^NT	U68555	2
10z-2	Malá Tŕňa	KT122407	Saccharomyces paradoxus CBS 432^NT	U68555	2
4/2z-11	Hercegkút	KT933339	Saccharomyces uvarum CBS 395^T	AJ279065	0
1/1z-1	Szegi		Torulaspora delbrueckii CBS 1146^T	U72156	0
1/1z-10	Szegi	KT933340	Torulaspora delbrueckii CBS 1146^T	U72156	0
15z-7	Abaújszántó	KT933341	Wickerhamomyces anomalus CBS 5759^T	U74592	0
8z-2	Černochov	KT175535	Zygoascus meyerae CBS 7521^T	AY447014	0
4–24	Hercegkút	KT933342	Zygosaccharomyces bailii CBS 680^T	U72161	0
8–29	Černochov		Zygosaccharomyces bailii CBS 680^T	U72161	0
2z-30	Sárazsadány		Zygotorulaspora florentina CBS 746^T	U72165	0
3/2–1	Hercegkút		Zygotorulaspora florentina CBS 746^T	U72165	0
7z-11	Bara	KU254556	Zygotorulaspora florentina CBS 746^T	U72165	0
9/2z-9	Malá Tŕňa		Zygotorulaspora florentina CBS 746^T	U72165	0
BASIDIOMYCOTA, AGARIMYCOTINA
13/1–34	Tolcsva	KT933343	Bulleromyces albus CBS 500^T	AF416643	0
6/2–10	Bara	KT933344	Cryptococcus carnescens CBS 973^T	AB035054	0
7/2–10	Bara		Cryptococcus flavescens CBS 942^T	AB035042	0
10/2–3	Malá Tŕňa		Cryptococcus flavescens CBS 942^T	AB035042	0
8–30	Černochov	KT933345	Cryptococcus flavescens CBS 942^T	AB035042	0
12/2–18	Tolcsva		Cryptococcus flavescens CBS 942^T	AB035042	0
13/1–29	Tolcsva		Cryptococcus flavescens CBS 942^T	AB035042	0
6–13	Bara	KT001494	Cryptococcus keelungensis CBS 10876^T	EF621562	24
6–21	Bara	KT933346	Cryptococcus magnus CBS 140^T Filobasidium elegans CBS 7640 Filobasidium floriforme CBS 6241	AF181851 AF181548 AF075498	0 0 0
7/1–40	Bara	KT933352	Cryptococcus magnus CBS 140^T Filobasidium elegans CBS 7640 Filobasidium floriforme CBS 6241	AF181851 AF181548 AF075498	0 0 0
7/1–55	Bara		Cryptococcus magnus CBS 140^T Filobasidium elegans CBS 7640 Filobasidium floriforme CBS 6241	AF181851 AF181548 AF075498	1 1 1
10/2–10	Malá Tŕňa	KT933347	Cryptococcus stepposus CBS 10265^T	DQ222456	0
11/2–10	Malá Tŕňa	KT933348	Cryptococcus victoriae CBS 8685^T	AF363647	2
12/2–50	Tolcsva		Cryptococcus victoriae CBS 8685^T	AF363647	2
13/2–49	Tolcsva	KU254557	Cryptococcus carnescens CBS 973^T Cryptococcus victoriae CBS 8685^T	AB035054 AF363647	8 8
13/1–37	Tolcsva	KT933349	Cryptococcus wieringae CBS 1937^T	AF181541	0
7/1–56	Bara	KT933353	Holtermanniella festucosa VKM Y-2930^T	AY462119	6
BASIDIOMYCOTA, PUCCINIOMYCOTINA
8/1–14	Černochov	KT933350	Curvibasidium cygneicollum CBS 4551^T	AF189928	0
10–10	Malá Tŕňa		Curvibasidium cygneicollum CBS 4551^T	AF189928	0
10–20	Malá Tŕňa		Curvibasidium cygneicollum CBS 4551^T	AF189928	0
15–23	Abaújszántó		Curvibasidium cygneicollum CBS 4551^T	AF189928	0
15–25	Abaújszántó		Curvibasidium cygneicollum CBS 4551^T	AF189928	1
6–23	Bara		Curvibasidium pallidicorallinum CBS 9091^T Rhodotorula nothofagi CBS 8166^T	AF444736 AF189950 ^w	0 1
7/1–1	Bara	KT156708	Curvibasidium pallidicorallinum CBS 9091^T Rhodotorula nothofagi CBS 8166^T	AF444736 AF189950 ^w	0 1
7/1–2	Bara		Curvibasidium pallidicorallinum CBS 9091^T Rhodotorula nothofagi CBS 8166^T	AF444736 AF189950 ^w	0 1
7/1–50	Bara		Curvibasidium pallidicorallinum CBS 9091^T Rhodotorula nothofagi CBS 8166^T	AF444736 AF189950 ^w	0 1
9–25	Malá Tŕňa	KT933351	Curvibasidium pallidicorallinum CBS 9091^T Rhodotorula nothofagi CBS 8166^T	AF444736 AF189950 ^w	1 2
9–50	Malá Tŕňa		Curvibasidium pallidicorallinum CBS 9091^T Rhodotorula nothofagi CBS 8166^T	AF444736 AF189950 ^w	0 1
11–2	Malá Tŕňa		Curvibasidium pallidicorallinum CBS 9091^T Rhodotorula nothofagi CBS 8166^T	AF444736 AF189950 ^w	0 1
13/1z-1	Tolcsva		Curvibasidium pallidicorallinum CBS 9091^T Rhodotorula nothofagi CBS 8166^T	AF444736 AF189950 ^w	0 1
13/1–16	Tolcsva	KT933354	Rhodotorula graminis CBS 2826^T	AF070431	0
6/2–4	Bara	KT933355	Sporobolomyces coprosmae CBS 7899^T Sporobolomyces oryzicola CBS 7228^T	AF189980 AF189990	1 1

, Type strain;

^NT

, neotype strain;

, contains one ambiguous nucleotide: N (A, G, C or T);

, isolate contains two ambiguous nucleotides: S (G or C) and Y (C or T);

, isolate contains one ambiguous nucleotide: Y (C or T);

, contains one ambiguous nucleotide: Y (C or T);

^z, isolate contains two ambiguous nucleotides: Y (C or T) and R (A or G).