Table 3.

Broader SNP survey for Ans. Genomic DNA sequencing of 19 dark pink and 19 white individuals from the same population as the transcriptome sequencing (Barra) reveals some allele frequency differences. No single SNP consistently differentiates the color morphs.

CDS Site No.	Reference allele (Ref.)	Alternate allele (Alt.)	Pink Ref. Homozygotes.	Pink Hets.	Pink Alt. Homozygotes.	White Ref. Homozygotes.	White Hets.	White Alt. Homozygotes.	Pink Ref. Allele Freq.	White Ref. Allele Freq.	Allele Freq Diff. (P-W)
Intron1*	G	A	17	1	0	14	3	1	0.97	0.86	0.11
Intron2	A	G	18	1	0	14	4	1	0.97	0.84	0.13
697	A	C	6	9	4	1	2	16	0.55	0.11	0.45
709	A	G	16	3	0	13	4	2	0.92	0.79	0.13
746	C	T	7	9	3	1	4	14	0.61	0.16	0.45
763	C	A	7	10	2	3	5	11	0.63	0.29	0.34
790	A	T	17	2	0	17	2	0	0.95	0.95	0.00
799	G	A	7	10	2	3	7	9	0.63	0.34	0.29
845	C	T	15	4	0	15	3	1	0.89	0.87	0.03
853	T	C	16	3	0	19	0	0	0.92	1.00	0.08
898	C	G	6	11	2	3	5	11	0.61	0.29	0.32
913	A	G	5	9	5	1	4	14	0.50	0.16	0.34
919	C	T	15	3	1	14	3	2	0.87	0.82	0.05
937	C	A	6	10	3	1	4	14	0.58	0.16	0.42
970	C	T	1	2	16	0	3	16	0.11	0.08	0.03
982	C	T	18	1	0	15	3	1	0.97	0.87	0.11
994	G	T	5	10	4	1	5	13	0.53	0.18	0.34

^*Sequence data was only available for 18 pink individuals for this site.