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. 2016 Jan 17;44(4):1514–1524. doi: 10.1093/nar/gkw007

Table 1. Primer list for tufB chromosomal insertions.

Primer forward Primer reverse Cloning step
5′-CATGTTGCCTGGTTGATGTGGTGA TATCACCGATTTATCCGTGTCTTAGA GGGACAATCGATGGTGAGCAAGGGCG AGGAGC-3′ 5′-GGGCATCAAATGATGCCCTTTTAGTGCG CATTGCGTCAAATGTTATCGGCAACATT ACCCTGTTATCCCTAGTTAC-3′ venus primer with flanking tufB ORF homology sequences for RED E/T recombination
5′-GTCTTCTTGCGCTAATTTTTTGCTAG GGATAACAGGGTAATTCTAGAGACGC ACACCGTGGAAAC-3′ 5′-CATGGAATTCATTACCCTGTTATCCCTA TGGACTCACAAAGAAAAAACGCCCGGTG TGCAAGACCGAGCGTTCTGAACAACCCG GGGCGGCGTTGTGACAATTTAC-3′ Gentamycin resistance gene primer for overlap extension with tetP-mCherry
5′-CATGAAGCTTGTTGACACTCTATCAT TGATAGAGTTATTTTACCACTCGGAT CCAGGAGGAACAATATGGTGTCTATC ACTAAAGATCAAATCATGGTGAGCAA GGGCGAGGAG-3′ 5′-ATTACCCTGTTATCCCTAGCAAAAAATT AGCGCAAGAAGACAAAAATCACCTTGCG CTAATGCTCTGTTACAGGGTACCTTACTTG TACAGCTCGTCCATG-3′ tetP-mCherry primer for overlap extension with the Ampicillin resistance gene
5′-GGGAGGAATAATAAGAAAAAATCT CTGCCAGGAAGCTATCGTTGAAAAGC AATGTGACGAGCGGATAACAATTTCA CACAGG-3′ 5′-CACTTTTTCAACATCATTGTGCTCAACA ATGCGCTCCTGCTAAACCATAATTCTTTTT ATCAGAGGGTTTTCCCAGTCACGACGTT-3′ primer for amplifying the tetP-mCherry-Ampicillin construct with homology for a divergent insertion in the upstream region of tufB