Table 2. Novel miRNA precursors identified in the human retina.
| Novel retina miRNA ID1 | Chr. | Coordinates | Strand | Detection2 | Mapped region | Overlapping gene | Overlap. repeats | Notes3 |
|---|---|---|---|---|---|---|---|---|
| nrm1 | 1 | 142850083–142850134 | - | 16 | intronic | PNAS-130 mRNA | - | - |
| nrm2 | 3 | 48357870–48357934 | + | 16 | intronic | SPINK8 | LINE | hsa-mir-2115 |
| nrm3 | 7 | 41697430–41697484 | + | 16 | intergenic | - | - | - |
| nrm4/5 | 8 | 65351159–65351217 | +/- | 16 | intergenic | - | - | - |
| nrm6 | 10 | 105362131–105362190 | + | 16 | intronic/exonic | NEURL, SH3PXD2A | - | - |
| nrm7 | 13 | 27259471–27259537 | + | 16 | intronic | WASF3 | MER3 | - |
| nrm8 | 19 | 57950479–57950542 | + | 16 | intronic | ZNF749 | LINE | - |
| nrm9 | 21 | 10205174–10205225 | + | 16 | intergenic | - | - | - |
| nrm10 | 22 | 31284149–31284211 | + | 16 | intronic | OSBP2 | - | - |
| nrm11/12 | 22 | 18190160–18190225 | +/- | 16 | intronic | BCL2L13 | - | - |
| nrm13 | 1 | 113424673–113424746 | - | 15 | intergenic | - | - | - |
| nrm14 | 3 | 129253485–129253531 | + | 15 | 3′ UTR | RHO | - | - |
| nrm15 | 10 | 135055629–135055715 | + | 15 | intergenic | - | - | - |
| nrm16 | 15 | 56657482–56657536 | - | 15 | intergenic | - | - | - |
| nrm17 | 22 | 37985238–37985300 | + | 15 | intergenic | - | - | - |
| nrm18 | 10 | 99635579–99635642 | - | 14 | intronic | CRTAC1 | - | mmu-mir-3085 |
| nrm19 | 8 | 56821959–56822008 | - | 13 | intronic | LYN | rRNA | - |
| nrm20 | 10 | 43966686–43966745 | + | 13 | intronic | ZNF487P | LTR | - |
| nrm21 | 12 | 87138854–87138913 | - | 13 | intronic | MGAT4C | - | mml-mir-3059 |
| nrm22 | 3 | 159000445–159000510 | - | 12 | intronic | SCHIP1 | LINE | hsa-mir-3919 |
| nrm23 | 1 | 46598160–46598217 | + | 11 | intronic; 5′ UTR | PIK3R3 | - | - |
| nrm24 | 1 | 18073682–18073757 | + | 11 | intergenic | - | MER81 | - |
| nrm25 | 2 | 71083968–71084025 | - | 11 | intergenic | - | LINE | - |
| nrm26 | 5 | 176941854–176941910 | - | 11 | intronic | DDX41 | - | - |
| nrm27 | 11 | 16812462–16812523 | - | 11 | intronic | PLEKHA7 | - | - |
| nrm28 | 11 | 100841607–100841663 | + | 11 | intronic | ARHGAP42 | LINE | - |
| nrm29 | 14 | 57273999–57274061 | - | 11 | intronic | OTX2 | - | - |
| nrm30 | 17 | 7738772–7738833 | - | 11 | intergenic | - | - | - |
| nrm31 | 19 | 58024385–58024430 | - | 11 | exonic | ZNF773 | LTR | - |
| nrm32 | X | 69674997–69675068 | + | 11 | intronic/exonic | DLG3 | low complexity | - |
| nrm33 | 1 | 109815217–109815283 | - | 10 | exonic | CELSR2 | - | - |
| nrm34 | 1 | 150207085–150207139 | + | 10 | intronic | ANP32E | - | - |
| nrm35 | 8 | 85320843–85320898 | + | 10 | intronic | RALYL | LTR | mml-mir-7198 |
| nrm36 | 11 | 112568119–112568195 | - | 10 | intergenic | - | - | - |
| nrm37 | 2 | 46575933–46576012 | + | 9 | intronic | EPAS1 | DNA | - |
| nrm38 | 17 | 31555853–31555923 | + | 9 | intronic | ASIC2 | - | - |
| nrm39 | 19 | 708865–708935 | - | 9 | intergenic | - | simple; low complexity | - |
| nrm40 | 19 | 50527860–50527911 | + | 9 | intronic | VRK3 | LINE | - |
| nrm41 | 10 | 73182013–73182067 | + | 8 | intronic | CDH23 | SINE | - |
| nrm42 | 11 | 1357505–1357575 | + | 8 | intergenic | - | low complexity | - |
| nrm43 | 11 | 76156409–76156473 | + | 8 | intronic | c11orf30 | - | - |
| nrm44 | 14 | 104005952–104006017 | + | 8 | intergenic | - | - | - |
| nrm45/46 | 14 | 31678113–31678198 | +/- | 8 | intergenic | - | - | - |
| nrm47 | 17 | 7210150–7210205 | - | 8 | intergenic | - | - | - |
| nrm48 | 17 | 65822070–65822138 | - | 8 | exonic | BPTF | low complexity | - |
| nrm49 | 17 | 79919292–79919363 | + | 8 | intergenic | - | low complexity | - |
| nrm50 | 19 | 5978316–5978373 | + | 8 | exonic | RANBP3 | - | - |
| nrm51 | 19 | 42837698–42837758 | + | 8 | intronic | MEGF8 | - | - |
1miRNAs analysed by qRT-PCR (Figure 5A) are shown in bold.
2Number of samples in which the novel miRNA was identified.
3miRNAs currently present in the miRBase v21.