Table 1. Quantification of the growth kinetics data of wild type and relaxed BW25113 E. coli.
Figure | Initial | Wash | Outgrowth | Doubling time, min |
Lag phase, h |
||
---|---|---|---|---|---|---|---|
medium | step | medium | ΔrelA | wt | ΔrelA | wt | |
S1A | LB | NA | NA | 26 ± 0.4 | 25 ± 0.3 | NA | NA |
1A | LB | − | LB | 39 ± 0.1 | 40 ± 1 | 0.2 ± 0.1 | 0.4 ± 0.1 |
1E | LB | + | LB | 36 ± 1 | 40 ± 1 | −0.1 ± 0.01 | 0.2 ± 0.1 |
1C | M9 | − | LB | 37 ± 1 | 37 ± 2 | 0.03 ± 0.02 | 0.04 ± 0.05 |
S1B | M9 | NA | NA | 58 ± 1 | 67 ± 2 | NA | NA |
1B | M9 | − | M9 | 82 ± 7 | 70 ± 3 | 4.5 ± 0.2 | 1.1 ± 0.03 |
5A | M9 | + | M9 | 102 ± 0.5 | 68 ± 0.5 | 4.3 ± 0.3 | 1.0 ± 0.5 |
1F | LB | − | M9 | 91 ± 3 | 94 ± 7 | 3.6 ± 0.07 | 1.7 ± 0.3 |
1D | LB | + | M9 | 82 ± 2 | 87 ± 6 | 9.1 ± 0.3 | 3.4 ± 0.5 |
2B | M9 | − | M9 + AA | 43 ± 0.3 | 44 ± 1 | 0.4 ± 0.1 | 0.6 ± 0.06 |
5B | M9 | + | M9gly | 109 ± 5 | 123 ± 3 | 3.8 ± 0.3 | 2.9 ± 0.2 |
S3 | M9 | − | M9gly + AA | 77 ± 3 | 73 ± 3 | 1.0 ± 0.2 | 1.2 ± 0.1 |
Lag phase is estimated by fitting the data points used to estimate the doubling time to an exponential growth model as per Monod21. M9glc corresponds to M9 medium supplemented with 0.4% glucose; AA indicates to the addition of the 20 amino acids set; gly indicates substitution of glucose for glycerol. Detailed description of the media composition and growth conditions is provided in the corresponding Figure legends. Bold letters indicate the step for which the parameters are quantified. NA signifies that corresponding parameter is not applicable for the experiment. SEM is rounded up to one significant digit. Results are reported as mean values of biological replicates (n ≥ 3), ± standard error of the mean.