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. 2016 Feb 29;17:151. doi: 10.1186/s12864-016-2467-y

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© Phelan et al. 2016

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 3 — Evidence of recombination at a gene level. A Manhattan plot showing genes that are likely to be recombination hotspots. The (−log10) p-value for recombination is plotted against genome position. All genes with p-values <0.05 are labelled. Genes labelled in colour grey (eccA3, pe_pgrs4, pe_pgrs17, ppe59, Rv3466 and esxV) become statistically non-significant after removing sites under selection