Table 6.
Number of genes associated with 25 general COGs functional categories
| Code | Value | % of totala | Description |
|---|---|---|---|
| J | 178 | 4.09 | Translation |
| A | 0 | 0 | RNA processing and modification |
| K | 334 | 7.67 | Transcription |
| L | 175 | 4.02 | Replication, recombination and repair |
| B | 0 | 0 | Chromatin structure and dynamics |
| D | 34 | 0.78 | Cell cycle control, mitosis and meiosis |
| Y | 0 | 0 | Nuclear structure |
| V | 88 | 2.02 | Defense mechanisms |
| T | 208 | 4.77 | Signal transduction mechanisms |
| M | 147 | 3.37 | Cell wall/membrane biogenesis |
| N | 64 | 1.47 | Cell motility |
| Z | 0 | 0 | Cytoskeleton |
| W | 0 | 0 | Extracellular structures |
| U | 45 | 1.03 | Intracellular trafficking and secretion |
| O | 111 | 2.55 | Posttranslational modification, protein turnover, chaperones |
| C | 156 | 3.58 | Energy production and conversion |
| G | 421 | 9.67 | Carbohydrate transport and metabolism |
| E | 271 | 6.22 | Amino acid transport and metabolism |
| F | 93 | 2.13 | Nucleotide transport and metabolism |
| H | 112 | 2.57 | Coenzyme transport and metabolism |
| I | 88 | 2.02 | Lipid transport and metabolism |
| P | 197 | 4.52 | Inorganic ion transport and metabolism |
| Q | 77 | 1.76 | Secondary metabolites biosynthesis, transport and catabolism |
| R | 531 | 12.20 | General function prediction only |
| S | 310 | 7.12 | Function unknown |
| — | 1532 | 35.20 | Not in COGs |
COGs, Clusters of Orthologous Groups database.
a
Total is based on total number of protein-coding genes in annotated genome.