Table 4.
Expression of pathogenesis related genes in response to Phytophthora cinnamomi inoculation in Eucalyptus nitens.
| Gene family | TAIR ID | E. grandis ID | Description | log2 expression |
|---|---|---|---|---|
| PR-1 | AT2G14580.1 | Eucgr.D01552 | Basic pathogenesis-related protein 1 | 4.56 |
| AT2G14580.1 | Eucgr.G01140 | Basic pathogenesis-related protein 1 | 4.40 | |
| AT2G14580.1 | Eucgr.G01148 | Basic pathogenesis-related protein 1 | 4.37 | |
| AT2G14580.1 | Eucgr.D01560 | Basic pathogenesis-related protein 1 | 4.36 | |
| AT2G14580.1 | Eucgr.G01171 | Pathogenesis-related gene 1 | 4.31 | |
| AT2G14610.1 | Eucgr.G01134 | Basic pathogenesis-related protein 1 | 3.34 | |
| AT2G14610.1 | Eucgr.G01137 | Pathogenesis-related gene 1 | 3.24 | |
| AT2G14610.1 | Eucgr.L02505 | Pathogenesis-related gene 1 | 3.14 | |
| AT2G14610.1 | Eucgr.L01707 | Pathogenesis-related gene 1 | 3.13 | |
| PR-3—Chitinase class I, II, IV, VI, VII | AT3G12500.1 | Eucgr.L00941 | Basic chitinase | 4.02 |
| AT3G12500.1 | Eucgr.J02519 | Basic chitinase | 3.94 | |
| AT3G12500.1 | Eucgr.L00938 | Basic chitinase | 3.93 | |
| AT3G54420.1 | Eucgr.H00326 | Homolog of carrot EP3-3 chitinase | 3.75 | |
| AT3G54420.1 | Eucgr.H00321 | Homolog of carrot EP3-3 chitinase | 3.75 | |
| AT3G12500.1 | Eucgr.L00939 | Basic chitinase | 3.73 | |
| AT3G54420.1 | Eucgr.H00328 | Homolog of carrot EP3-3 chitinase | 3.57 | |
| AT3G12500.1 | Eucgr.L00937 | Basic chitinase | 3.47 | |
| AT3G12500.1 | Eucgr.I01495 | Basic chitinase | 3.11 | |
| AT3G54420.1 | Eucgr.K02166 | Homolog of carrot EP3-3 chitinase | 2.53 | |
| AT3G54420.1 | Eucgr.K02166 | Homolog of carrot EP3-3 chitinase | 2.21 | |
| AT3G54420.1 | Eucgr.A00020 | Homolog of carrot EP3-3 chitinase | 1.43 | |
| AT1G05850.1 | Eucgr.H00455 | Chitinase family protein (TAIR 9) | −0.75 | |
| AT3G16920.1 | Eucgr.H04034 | Chitinase-like protein 2 | −1.33 | |
| PR-4—Chitin-binding | AT3G04720.1 | Eucgr.B02124 | Pathogenesis-related 4 | 3.42 |
| AT3G04720.1 | Eucgr.L03258 | Pathogenesis-related 4 | 3.32 | |
| AT3G04720.1 | Eucgr.B02122 | Pathogenesis-related 4 | 3.06 | |
| PR-5—Thaumatin-like and osmotin | AT1G20030.2 | Eucgr.E01382 | Pathogenesis-related thaumatin superfam | 5.42 |
| AT1G20030.2 | Eucgr.E01384 | Pathogenesis-related thaumatin superfam | 5.31 | |
| AT1G20030.2 | Eucgr.E01389 | Pathogenesis-related thaumatin superfam | 5.23 | |
| AT1G20030.2 | Eucgr.E01385 | Pathogenesis-related thaumatin superfam | 5.13 | |
| AT4G11650.1 | Eucgr.H03863 | Osmotin 34 | 5.09 | |
| AT1G20030.2 | Eucgr.E01381 | Pathogenesis-related thaumatin superfam | 4.96 | |
| AT4G11650.1 | Eucgr.H03865 | Osmotin 34 | 4.93 | |
| AT4G11650.1 | Eucgr.H03864 | Osmotin 34 | 4.77 | |
| AT4G11650.1 | Eucgr.L01962 | Osmotin 34 | 4.69 | |
| AT4G11650.1 | Eucgr.E00557 | Osmotin 34 | 4.43 | |
| AT4G11650.1 | Eucgr.D01888 | Osmotin 34 | 3.57 | |
| AT4G11650.1 | Eucgr.D01892 | Osmotin 34 | 3.34 | |
| AT4G11650.8 | Eucgr.D01887 | Osmotin 34 | 3.31 | |
| AT4G11650.9 | Eucgr.E00560 | Osmotin 34 | 2.97 | |
| AT5G38280.1 | Eucgr.A01474 | PR5-like receptor kinase | 1.03 | |
| AT5G38280.1 | Eucgr.A01470 | PR5-like receptor kinase | 0.96 | |
| AT5G38280.1 | Eucgr.A01478 | PR5-like receptor kinase | 0.78 | |
| AT2G28790.1 | Eucgr.J02061 | Pathogenesis-related thaumatin superfam | −1.18 | |
| AT4G38660.1 | Eucgr.G01772 | Pathogenesis-related thaumatin superfam | −1.33 | |
| AT1G73620.1 | Eucgr.B00944 | Pathogenesis-related thaumatin superfam | −1.36 | |
| PR-8—Chitinase class III | AT5G24090.1 | Eucgr.E00091 | Chitinase A | 2.40 |
| AT5G24090.1 | Eucgr.L03478 | Chitinase A | 1.52 | |
| PR-9—Peroxidase | AT4G37530.1 | Eucgr.J02352 | Peroxidase superfamily protein | 3.65 |
| AT4G11600.1 | Eucgr.D01857 | Glutathione peroxidase 6 (TAIR 9) | 3.08 | |
| AT1G71695.1 | Eucgr.F04198 | Peroxidase superfamily protein | 2.34 | |
| AT1G05260.1 | Eucgr.A01385 | Peroxidase superfamily protein | 1.83 | |
| AT1G71695.1 | Eucgr.F04195 | Peroxidase superfamily protein | 1.46 | |
| AT1G71695.1 | Eucgr.L02740 | Peroxidase superfamily protein | 1.39 | |
| AT5G40150.1 | Eucgr.J02173 | Peroxidase superfamily protein | −1.23 | |
| AT5G42180.1 | Eucgr.F03724 | Peroxidase superfamily protein | −1.76 | |
| AT4G21960.1 | Eucgr.E04056 | Peroxidase superfamily protein | −1.85 | |
| PR-10—Ribonuclease-like | AT1G80780.3 | Eucgr.F03953 | Polynucleotidyl transferase, ribonuclease | 0.83 |
| AT5G22250.1 | Eucgr.J00535 | Polynucleotidyl transferase, ribonuclease | −1.46 | |
| PR-12—Defensins | AT4G11393.1 | Eucgr.K03440 | Defensin-like (DEFL) family protein | 2.72 |
| PR-14—Lipid transfer proteins | AT5G48485.1 | Eucgr.H00727 | Bifunctional inhibitor/lipid-transfer protein | −0.85 |
| AT5G64080.1 | Eucgr.I02679 | Bifunctional inhibitor/lipid-transfer protein | −0.95 | |
| AT3G18280.1 | Eucgr.B00824 | Bifunctional inhibitor/lipid-transfer protein | −1.00 | |
| AT5G59320.1 | Eucgr.K01283 | Lipid transfer protein 3 | −1.20 | |
| AT5G55460.1 | Eucgr.F03514 | Bifunctional inhibitor/lipid-transfer protein | −1.31 | |
| AT5G59320.1 | Eucgr.A00746 | Lipid transfer protein 4 | −1.60 | |
| AT5G05960.1 | Eucgr.K03041 | Bifunctional inhibitor/lipid-transfer protein | −1.66 | |
| AT5G59320.1 | Eucgr.K01282 | Lipid transfer protein 5 | −1.76 | |
| PR-15—Oxalate oxidases (Germin) | AT3G62020.1 | Eucgr.A00990 | Germin-like protein 10 | −1.18 |
Up and down regulated genes are indicated as a gradient from bright red to bright green.