Table 1.
SN | Author | Reference | Country | Ethnicity | Cancer Type | Case/Control | pHWE | MAF | Genotyping Method |
---|---|---|---|---|---|---|---|---|---|
DCC rs714 (A > G) | |||||||||
1 | Toma et al., 2009 | [34] | Romania | Caucasian | CRC | 120/60 | 0.603 | 0.28 | PCR-RFLP |
2 | Rai et al., 2013 | [10] | India | Asian | GBC | 406/260 | 0.062 | 0.38 | PCR-RFLP |
3 | Malik et al., 2013 | [12] | India | Asian | EC | 135/195 | 0.187 | 0.36 | PCR-RFLP |
4 | Malik et al., 2013 | [12] | India | Asian | GC | 108/195 | 0.187 | 0.36 | PCR-RFLP |
5 | Djansugurova et al., 2015 | [13] | Kazakhstan | Mixed | CRC | 249/242 | 0.187 | 0.36 | PCR-RFLP |
PSCA rs2294008 (C > T) | |||||||||
1 | Wu et al., 2009 | [36] | China | Asian | GC | 1736/1020 | 0.587 | 0.28 | PCR-RFLP |
2 | Matsuo et al., 2009 | [27] | Japan | Asian | GC | 708/708 | 0.638 | 0.38 | Taqman |
3 | Wang et al., 2010 | [28] | China | Asian | BC | 581/580 | 0.508 | 0.27 | PCR-RFLP |
4 | Lu et al., 2010 | [37] | China | Asian | GC | 1053/1100 | 0.166 | 0.25 | PCR-RFLP |
5 | Ou et al., 2010 | [38] | China | Asian | GC | 196/246 | 0.924 | 0.27 | PCR-LDR |
6 | Zeng et al., 2011 | [39] | China | Asian | GC | 460/549 | 0.493 | 0.27 | PCR-RFLP |
7 | Song et al., 2011 | [40] | Korea | Asian | GC | 3245/1700 | 0.131 | 0.48 | PCR-RFLP |
8 | Joung et al., 2011 | [41] | Korea | Asian | PC | 194/169 | 0.963 | 0.47 | MASS ARRAY |
9 | Lochhead et al., 2011 | [42] | USA | Caucasian | EC | 159/211 | 0.405 | 0.5 | Taqman |
10 | Lochhead et al., 2011 | [42] | USA | Caucasian | GC | 309/211 | 0.405 | 0.5 | Taqman |
11 | Sala et al., 2012 | [43] | Europe | Caucasian | GC | 411/1530 | 0.088 | 0.44 | SNP ARRAY |
12 | Kim et al., 2012 | [44] | Korea | Asian | BrC | 456/461 | 0.324 | 0.49 | MALDI-TOF MS |
13 | Smith et al., 2012 | [45] | Scotland | Caucasian | CRC | 77/804 | 0.981 | 0.4 | Taqman |
14 | Li et al., 2012 | [46] | China | Asian | GC | 300/300 | 0.65 | 0.26 | MASS-ARRAY IPLEX |
15 | Ono et al., 2013 | [47] | Japan | Asian | GBC | 44/173 | 0.242 | 0.39 | Taqman |
16 | Ma et al., 2013 | [48] | China | Asian | BC | 184/962 | 0.562 | 0.25 | MASS-ARRAY IPLEX |
17 | Zhao et al., 2013 | [35] | China | Asian | GC | 717/951 | 0.913 | 0.3 | PCR-DHPLC |
18 | Rai et al., 2013 | [24] | India | Asian | GBC | 405/247 | 0.492 | 0.43 | Taqman |
19 | Dai et al., 2014 | [49] | China | Asian | EC | 2083/2220 | 0.944 | 0.27 | Taqman |
20 | Sun et al., 2014 | [50] | Texas | Caucasian | GC | 132/125 | 0.926 | 0.49 | Taqman |
21 | Wang et al., 2014 | [51] | China | Asian | BC | 1210/1008 | 0.739 | 0.25 | Taqman |
22 | Lee et al., 2014 | [52] | Korea | Asian | BC | 411/1700 | 0.13 | 0.48 | HRM |
23 | Kupcinskas et al., 2014 | [53] | Lithuania | Caucasian | GC | 252/246 | 0.834 | 0.48 | Taqman |
24 | Sun et al., 2015 | [54] | China | Asian | GC | 692/774 | 0.105 | 0.28 | Taqman |
25 | MA et al., 2015 | [55] | Spain | Caucasian | GC | 603/675 | 0.349 | 0.45 | Taqman |
26 | Ichikawa et al., 2015 | [56] | Japan | Asian | GC | 193/266 | 0.185 | 0.42 | PCR-RFLP |
27 | Zhang et al., 2015 | [57] | China | Asian | GC | 476/481 | 0.617 | 0.27 | MASS ARRAY |
28 | Kupcinskas et al., 2015 | [58] | Latvia | Caucasian | CRC | 192/382 | 0.943 | 0.48 | Taqman |
PSCA rs2976392 (G > A) | |||||||||
1 | Wu et al., 2009 | [36] | China | Asian | GC | 1724/1002 | 0.35 | 0.29 | PCR-RFLP |
2 | Matsuo et al., 2009 | [27] | Japan | Asian | GC | 707/707 | 0.635 | 0.37 | Taqman |
3 | Lu et al., 2010 | [37] | China | Asian | GC | 1043/1082 | 0.336 | 0.26 | PCR-RFLP |
4 | Ou et al., 2010 | [38] | China | Asian | GC | 196/246 | 0.298 | 0.26 | PCR-LDR |
5 | Joung et al., 2011 | [41] | Korea | Asian | PC | 194/168 | 0.848 | 0.47 | MASS ARRAY |
6 | Kim et al., 2012 | [44] | Korea | Asian | BrC | 453/460 | 0.397 | 0.49 | MALDI-TOF MS |
7 | Ono et al., 2013 | [47] | Japan | Asian | GBC | 44/173 | 0.328 | 0.61 | Taqman |
8 | Kupcinskas et al., 2014 | [53] | Lithuania | Caucasian | GC | 249/232 | 0.986 | 0.48 | Taqman |
9 | Sun et al., 2015 | [54] | China | Asian | GC | 692/774 | 0.13 | 0.29 | Taqman |
10 | Zhang et al., 2015 | [57] | China | Asian | GC | 476/481 | 0.939 | 0.28 | MASS ARRAY |
11 | Kupcinskas et al., 2015 | [58] | Latvia | Caucasian | CRC | 192/382 | 0.856 | 0.48 | Taqman |
GC—Gastric cancer, BC—Bladder cancer, GBC—Gallbladder cancer, EC—Esophageal cancer, BrC—Breast Cancer, CRC—Colorectal cancer, PC—Prostate Cancer, HWE Hardy—Weinberg equilibrium, MAF—Minor allelic frequency, PCR—Polymerase chain reaction, RFLP—Restriction fragment length polymorphism, LDR—Ligation detection reaction, DHPLC—Denaturing high performance liquid chromatography, HRM—High-resolution melting, SNP—Single nucleotide polymorphism, MALDI-TOF-MS—Matrix Assisted Laser Desorption/Ionization Time of Flight Mass Spectrometry.